RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SLX4Q8IY92 1834 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 RCCD1A6NED2 376 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 EPHB6O15197 1021 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 SASH3O75995 380 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 ERCC3P19447 782 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 SLC1A4P43007 532 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 AMPD2Q01433 879 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 GUF1Q8N442 669 aaKnown RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 GTPBP4Q9BZE4 634 aaKnown RBP17.21■□□□□ 0.35
UPF3B-202ENST00000345865 MYO1AQ9UBC5 1043 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 PCDHA1Q9Y5I3 950 aa17.21■□□□□ 0.35
UPF3B-202ENST00000345865 RBM5P52756 815 aaKnown RBP eCLIP17.2■□□□□ 0.34
UPF3B-202ENST00000345865 SNAP25P60880 206 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 JAG1P78504 1218 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 ZBED6P86452 979 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 STRIP1Q5VSL9 837 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 SLFN13Q68D06 897 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 RETREG2Q8NC44 543 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 NUP58Q9BVL2 599 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 IDI2Q9BXS1 227 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 FGFBP2Q9BYJ0 223 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 ANKZF1Q9H8Y5 726 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 PLSCR1O15162 318 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 ECE2O60344 883 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 TBC1D8O95759 1140 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 APBA3O96018 575 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 TATDN1Q6P1N9 297 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 LRRC55Q6ZSA7 311 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 LACRTQ9GZZ8 138 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 TMX4Q9H1E5 349 aaPredicted RBP17.2■□□□□ 0.34
UPF3B-202ENST00000345865 NHEJ1Q9H9Q4 299 aaPredicted RBP17.2■□□□□ 0.34
UPF3B-202ENST00000345865 NYAP2Q9P242 653 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 PI4KBQ9UBF8 816 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 SIK3Q9Y2K2 1263 aa17.2■□□□□ 0.34
UPF3B-202ENST00000345865 MEIS2O14770 477 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 CDC37Q16543 378 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 VWA3BQ502W6 1294 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 UTP14CQ5TAP6 766 aaKnown RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 C2CD5Q86YS7 1000 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 PCMTD1Q96MG8 357 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 MRIQ9BWK5 157 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 DHX36Q9H2U1 1008 aaKnown RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 KANSL2Q9H9L4 492 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 E9PMD0 336 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 GDF11O95390 407 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 PLEKP08567 350 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 GCFC2P16383 781 aaKnown RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 TAL1P17542 331 aaPredicted RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 TSR1Q2NL82 804 aaKnown RBP17.19■□□□□ 0.34
UPF3B-202ENST00000345865 HYIQ5T013 277 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 CEP112Q8N8E3 955 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 NDST4Q9H3R1 872 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 HAUS4Q9H6D7 363 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 KCNMB3Q9NPA1 279 aa17.19■□□□□ 0.34
UPF3B-202ENST00000345865 ENC1O14682 589 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 ZNF263O14978 683 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 COASYQ13057 564 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 FIGNQ5HY92 759 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 DCAF4Q8WV16 495 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 ANO3Q9BYT9 981 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 DUSP10Q9Y6W6 482 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 A0A1W2PQJ5 194 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 MARCH6O60337 910 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 STAT3P40763 770 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 CYP27A1Q02318 531 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 CCDC122Q5T0U0 273 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 NCAPH2Q6IBW4 605 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 CRYGNQ8WXF5 182 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 PNKPQ96T60 521 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 HDAC6Q9UBN7 1215 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 KIAA1024Q9UPX6 916 aa17.18■□□□□ 0.34
UPF3B-202ENST00000345865 SMCHD1A6NHR9 2005 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 NPHP3-ACAD11A0A0J9YXS1 232 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 POTEB3A0JP26 581 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 POTECB2RU33 542 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 F5H6K3 240 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 LRRC63Q05C16 580 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 GABPB1Q06547 395 aaPredicted RBP17.17■□□□□ 0.34
UPF3B-202ENST00000345865 KLRC3Q07444 240 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 TUBB2AQ13885 445 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 RRP1BQ14684 758 aaKnown RBP17.17■□□□□ 0.34
UPF3B-202ENST00000345865 FKBP15Q5T1M5 1219 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 POTEBQ6S5H4 581 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 CCDC155Q8N6L0 562 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 TUBB2BQ9BVA1 445 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 FAM207AQ9NSI2 230 aaPredicted RBP17.17■□□□□ 0.34
UPF3B-202ENST00000345865 MYO6Q9UM54 1294 aa17.17■□□□□ 0.34
UPF3B-202ENST00000345865 PSMD14O00487 310 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 SSBP05455 408 aaKnown RBP eCLIP17.16■□□□□ 0.34
UPF3B-202ENST00000345865 CHRNA5P30532 468 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 CACNB1Q02641 598 aaPredicted RBP17.16■□□□□ 0.34
UPF3B-202ENST00000345865 ICA1Q05084 483 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 PSMD2Q13200 908 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 MAN2A1Q16706 1144 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 ZCWPW2Q504Y3 356 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 TDRD3Q9H7E2 651 aaKnown RBP17.16■□□□□ 0.34
UPF3B-202ENST00000345865 TBC1D7Q9P0N9 293 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 PCDHA2Q9Y5H9 948 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 CYP3A7-CYP3A51PA0A087WV96 503 aa17.16■□□□□ 0.34
UPF3B-202ENST00000345865 EIF3CLB5ME19 914 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms