RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MYL1P05976 194 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 ARHGAP4P98171 946 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 KMT5BQ4FZB7 885 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 PRAMEF18Q5VWM3 479 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 C9orf131Q5VYM1 1079 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 CRYGNQ8WXF5 182 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 MBOAT7Q96N66 472 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 FBXO28Q9NVF7 368 aa14.37□□□□□ -0.11
CLK3-201ENST00000345005 GCOM1H8Y6P7 765 aaPredicted RBP14.36□□□□□ -0.11
CLK3-201ENST00000345005 POLR2MP0CAP2 368 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 PTPRAP18433 802 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 BMP6P22004 513 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 SREBF1P36956 1147 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 BACE1P56817 501 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 MYL5Q02045 173 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 SPP2Q13103 211 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 DPY19L2Q6NUT2 758 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 LDHDQ86WU2 507 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 ZNF280CQ8ND82 737 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 DCPSQ96C86 337 aaKnown RBP14.36□□□□□ -0.11
CLK3-201ENST00000345005 KLRG1Q96E93 195 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 EHMT1Q9H9B1 1298 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 PNMA2Q9UL42 364 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 C19orf81C9J6K1 198 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 ZSCAN12O43309 604 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 ICAM1P05362 532 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 CYP3A4P08684 503 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 FDX1P10109 184 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 SEMA3FQ13275 785 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 MTMR2Q13614 643 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 NAALADL2Q58DX5 795 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 NOL9Q5SY16 702 aaKnown RBP14.36□□□□□ -0.11
CLK3-201ENST00000345005 SAMD1Q6SPF0 538 aaPredicted RBP14.36□□□□□ -0.11
CLK3-201ENST00000345005 SLFN12Q8IYM2 578 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 ZKSCAN4Q969J2 545 aaPredicted RBP14.36□□□□□ -0.11
CLK3-201ENST00000345005 EMILIN3Q9NT22 766 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 RMND1Q9NWS8 449 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 PCDHA12Q9UN75 941 aa14.36□□□□□ -0.11
CLK3-201ENST00000345005 RBBP6Q7Z6E9 1792 aaKnown RBP14.35□□□□□ -0.11
CLK3-201ENST00000345005 TBX3O15119 743 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 CFBP00751 764 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 H2AFXP16104 143 aaPredicted RBP14.35□□□□□ -0.11
CLK3-201ENST00000345005 NCAPHQ15003 741 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 STAMQ92783 540 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 HAS1Q92839 578 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 PPP1R13BQ96KQ4 1090 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 TANGO6Q9C0B7 1094 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 KBTBD4Q9NVX7 518 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 CALCOCO1Q9P1Z2 691 aa14.35□□□□□ -0.11
CLK3-201ENST00000345005 USP27XA6NNY8 438 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 SLC26A4O43511 780 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 PLCG1P19174 1290 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 VCAM1P19320 739 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 HOXA13P31271 388 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 CIITAP33076 1130 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 AMPD3Q01432 767 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 Q4G0T1 1027 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 TEX35Q5T0J7 233 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 KRT79Q5XKE5 535 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 SULF1Q8IWU6 871 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 CDK5RAP3Q96JB5 506 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 P2RX7Q99572 595 aaKnown RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 MTRQ99707 1265 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 MMTAG2Q9BU76 263 aaKnown RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 KCNMB3Q9NPA1 279 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 TRMT1Q9NXH9 659 aaKnown RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 CCPG1Q9ULG6 757 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 CTDP1Q9Y5B0 961 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 RLFQ13129 1914 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 COL11A1P12107 1806 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 GRIN3BO60391 1043 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 FLOT1O75955 427 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 TAL1P17542 331 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 ERCC5P28715 1186 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 ETF1P62495 437 aaKnown RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 CUL4BQ13620 913 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 FBXO38Q6PIJ6 1188 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 TMC6Q7Z403 805 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 ZNF784Q8NCA9 323 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 FAM20AQ96MK3 541 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 PLIN2Q99541 437 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 BLZF1Q9H2G9 400 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 RPAP3Q9H6T3 665 aaPredicted RBP14.34□□□□□ -0.11
CLK3-201ENST00000345005 SLC38A10Q9HBR0 1119 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 STK17AQ9UEE5 414 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 PPP1R9AQ9ULJ8 1098 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.34□□□□□ -0.113e-7■■■□□ 15.1
CLK3-201ENST00000345005 ZHX2Q9Y6X8 837 aa14.34□□□□□ -0.11
CLK3-201ENST00000345005 SSC5DA1L4H1 1573 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 ZBED4O75132 1171 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 USP2O75604 605 aaPredicted RBP14.33□□□□□ -0.12
CLK3-201ENST00000345005 RPN1P04843 607 aaKnown RBP14.33□□□□□ -0.12
CLK3-201ENST00000345005 CASP1P29466 404 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 ZNF76P36508 570 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 TUBB4BP68371 445 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 ELF2Q15723 593 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 E4F1Q66K89 784 aaPredicted RBP14.33□□□□□ -0.12
CLK3-201ENST00000345005 MCF2L2Q86YR7 1114 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 SAMD3Q8N6K7 520 aa14.33□□□□□ -0.12
CLK3-201ENST00000345005 ENOX1Q8TC92 643 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms