RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TMOD4Q9NZQ9 345 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 AFG3L2Q9Y4W6 797 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 SYNRGQ9UMZ2 1314 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 VWA5AO00534 786 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MSNP26038 577 aaKnown RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 CCT6AP40227 531 aaKnown RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 STAT3P40763 770 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 HSD17B4P51659 736 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MAP3K9P80192 1104 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 ZNF658Q5TYW1 1059 aaPredicted RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 ENOX1Q8TC92 643 aaKnown RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 LARP4BQ92615 738 aaKnown RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 IFNKQ9P0W0 207 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 NFE2L3Q9Y4A8 694 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 CSADQ9Y600 493 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 KDM3AQ9Y4C1 1321 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 IGLV3-22A0A075B6J6 115 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 PPP1R3GB7ZBB8 358 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MSH4O15457 936 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 AMPD3Q01432 767 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 KMT5BQ4FZB7 885 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 TMEM119Q4V9L6 283 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MUM1L1Q5H9M0 696 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 CT47A1Q5JQC4 288 aaPredicted RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 SV2BQ7L1I2 683 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MCF2L2Q86YR7 1114 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 FAM20AQ96MK3 541 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 MED15Q96RN5 788 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 TRIM9Q9C026 710 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 RRAGDQ9NQL2 400 aaPredicted RBP15.03■□□□□ -0
HMGB1-202ENST00000339872 ZKSCAN5Q9Y2L8 839 aa15.03■□□□□ -0
HMGB1-202ENST00000339872 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.03■□□□□ -0
HMGB1-202ENST00000339872 KLRC4O43908 158 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 FDX1P10109 184 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 ASIC1P78348 528 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 FANCCQ00597 558 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 MCM6Q14566 821 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 HSP90AA4PQ58FG1 418 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 RAD54LQ92698 747 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 XPO4Q9C0E2 1151 aaKnown RBP15.02■□□□□ -0
HMGB1-202ENST00000339872 CTNND2Q9UQB3 1225 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 GDAQ9Y2T3 454 aa15.02■□□□□ -0
HMGB1-202ENST00000339872 SCN4AP35499 1836 aa15.02□□□□□ -0.01
HMGB1-202ENST00000339872 STX17P56962 302 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 SPIRE1Q08AE8 756 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 KCNB1Q14721 858 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 ECM1Q16610 540 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 NCAPH2Q6IBW4 605 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 KCNK18Q7Z418 384 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 ZNF830Q96NB3 372 aaPredicted RBP15.01□□□□□ -0.01
HMGB1-202ENST00000339872 C7orf25Q9BPX7 421 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 NT5C3AQ9H0P0 336 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 RTN4Q9NQC3 1192 aaKnown RBP15.01□□□□□ -0.01
HMGB1-202ENST00000339872 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.01□□□□□ -0.01
HMGB1-202ENST00000339872 COL20A1Q9P218 1284 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 PNMA2Q9UL42 364 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 GLTPD2A6NH11 291 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 SERPINC1P01008 464 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 IREB2P48200 963 aaKnown RBP15.01□□□□□ -0.01
HMGB1-202ENST00000339872 CDCA5Q96FF9 252 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 ZFP91Q96JP5 570 aaPredicted RBP15.01□□□□□ -0.01
HMGB1-202ENST00000339872 TRERF1Q96PN7 1200 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 NRBP1Q9UHY1 535 aa15.01□□□□□ -0.01
HMGB1-202ENST00000339872 POTEB3A0JP26 581 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 POTECB2RU33 542 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 RHOBTB3O94955 611 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 DSG3P32926 999 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 NF2P35240 595 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 COG2Q14746 738 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 EAPPQ56P03 285 aaPredicted RBP15□□□□□ -0.01
HMGB1-202ENST00000339872 HYIQ5T013 277 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 HAUS3Q68CZ6 603 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 POTEBQ6S5H4 581 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 RBM46Q8TBY0 533 aaKnown RBP15□□□□□ -0.01
HMGB1-202ENST00000339872 ZC3H15Q8WU90 426 aaKnown RBP15□□□□□ -0.01
HMGB1-202ENST00000339872 CNKSR2Q8WXI2 1034 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 CCDC47Q96A33 483 aaKnown RBP15□□□□□ -0.01
HMGB1-202ENST00000339872 EXOC1Q9NV70 894 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 ZC3H4Q9UPT8 1303 aaKnown RBP15□□□□□ -0.01
HMGB1-202ENST00000339872 PTGS1P23219 599 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 GHRHRQ02643 423 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 CEP55Q53EZ4 464 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 CATSPERGQ6ZRH7 1159 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 CCDC186Q7Z3E2 898 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 KIAA1024Q9UPX6 916 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 MAPK8IP1Q9UQF2 711 aa15□□□□□ -0.01
HMGB1-202ENST00000339872 TPM3P06753 285 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 PRCPP42785 496 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 PDE4DQ08499 809 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 PAK1Q13153 545 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 TTLL12Q14166 644 aaPredicted RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SH3D19Q5HYK7 790 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SPATA1Q5VX52 437 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SNRNP48Q6IEG0 339 aaKnown RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SLC30A10Q6XR72 485 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 REPS2Q8NFH8 660 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 ERMNQ8TAM6 284 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SYTL5Q8TDW5 730 aaPredicted RBP14.99□□□□□ -0.01
HMGB1-202ENST00000339872 ELP3Q9H9T3 547 aa14.99□□□□□ -0.01
HMGB1-202ENST00000339872 SAMSN1Q9NSI8 373 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms