RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MRGBPQ9NV56 204 aa11.19□□□□□ -0.62
CCDC88A-202ENST00000336838 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 NR2F2P24468 414 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 TTLL12Q14166 644 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 KCTD17Q8N5Z5 321 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 PSD3Q9NYI0 1048 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 CEP72Q9P209 647 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 GNPATO15228 680 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 SLC12A2P55011 1212 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 MYL7Q01449 175 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 DBN1Q16643 649 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 OTUD7BQ6GQQ9 843 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 APLFQ8IW19 511 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 HEG1Q9ULI3 1381 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 CDHR1Q96JP9 859 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 CENPKQ9BS16 269 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 MYL10Q9BUA6 226 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 ADAM21Q9UKJ8 722 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 USP31Q70CQ4 1352 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 ZBED4O75132 1171 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 EHHADHQ08426 723 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 EFHD1Q9BUP0 239 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 PFASO15067 1338 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 CC2D1AQ6P1N0 951 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 RILPQ96NA2 401 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 NLRC4Q9NPP4 1024 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 XDHP47989 1333 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 AMNQ9BXJ7 453 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 GCNT4Q9P109 453 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 CTNND1O60716 968 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 SLC4A8Q2Y0W8 1093 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 C3orf20Q8ND61 904 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 FLAD1Q8NFF5 587 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 MRFAP1Q9Y605 127 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 TACC3Q9Y6A5 838 aa11.18□□□□□ -0.62
CCDC88A-202ENST00000336838 POLR2MP0CAP2 368 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ARL1P40616 181 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 LIG3P49916 1009 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 IFT88Q13099 833 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 TEKT3Q9BXF9 490 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 NRBP1Q9UHY1 535 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 M0R2C6 588 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 MYO1FO00160 1098 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 CHUKO15111 745 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ATP2B4P23634 1241 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 POLR2FP61218 127 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 LONRF3Q496Y0 759 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 EPSTI1Q96J88 318 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 SCOCQ9UIL1 159 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 PCDHA13Q9Y5I0 950 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 RASSF7Q02833 373 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 USP17L12C9JPN9 530 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 USP17L21D6R901 530 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 TECP42680 631 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ANKRD20A4Q4UJ75 823 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ANKRD20A8PQ5CZ79 823 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ANKRD20A2Q5SQ80 823 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ANKRD20A1Q5TYW2 823 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 PCGF5Q86SE9 256 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 PTPREP23469 700 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ATP1A2P50993 1020 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 DGKHQ86XP1 1220 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 NACC1Q96RE7 527 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 MRPL40Q9NQ50 206 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 KRT31Q15323 416 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 SURF1Q15526 300 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 GEN1Q17RS7 908 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ICE2Q659A1 982 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 MIER3Q7Z3K6 550 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ATP6V0A1Q93050 837 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 DAPK3O43293 454 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 CLTAP09496 248 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 MFSD14BQ5SR56 506 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 ZNF589Q86UQ0 364 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 GFPT2O94808 682 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 DYMQ7RTS9 669 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 FMR1NBQ8N0W7 255 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 CDHR2Q9BYE9 1310 aa11.17□□□□□ -0.62
CCDC88A-202ENST00000336838 PPFIA2O75334 1257 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 ZBTB8OSQ8IWT0 167 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SENP1Q9P0U3 644 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 NOP56O00567 594 aaKnown RBP11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SRGAP2BP0DMP2 458 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 DR1Q01658 176 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 GRAMD1AQ96CP6 724 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 PAGE5Q96GU1 130 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 ZMYND12Q9H0C1 365 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 MAPK13O15264 365 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 CTIFO43310 598 aaKnown RBP11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 CUL4BQ13620 913 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 TMTC3Q6ZXV5 915 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SGMS1Q86VZ5 419 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SDCCAG3Q96C92 435 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SERPINI1Q99574 410 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 SLITRK6Q9H5Y7 841 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 EPB41L5Q9HCM4 733 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 NDST4Q9H3R1 872 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 NOP53Q9NZM5 478 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms