RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SPDYE3A6NKU9 549 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 STXBP3O00186 592 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 STAM2O75886 525 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 ACLYP53396 1101 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 AK2P54819 239 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 FSCN1Q16658 493 aaKnown RBP16.09■□□□□ 0.17
LIMS1-201ENST00000332345 BRDTQ58F21 947 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-201ENST00000332345 CCSAPQ6IQ19 270 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-201ENST00000332345 XRRA1Q6P2D8 792 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 SLC39A5Q6ZMH5 540 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 FERMT2Q96AC1 680 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 EHMT1Q9H9B1 1298 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 RIC8AQ9NPQ8 531 aa16.09■□□□□ 0.17
LIMS1-201ENST00000332345 CDKL5O76039 1030 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 FOSP01100 380 aaPredicted RBP16.08■□□□□ 0.16
LIMS1-201ENST00000332345 ASGR1P07306 291 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 TGFB3P10600 412 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 ADCY7P51828 1080 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 ATN1P54259 1190 aaPredicted RBP16.08■□□□□ 0.16
LIMS1-201ENST00000332345 PKN1Q16512 942 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 OR6J1Q8NGC5 347 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 VTI1AQ96AJ9 217 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 GLT1D1Q96MS3 346 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 TPCN1Q9ULQ1 816 aa16.08■□□□□ 0.16
LIMS1-201ENST00000332345 A0A1W2PQ45 241 aaPredicted RBP16.07■□□□□ 0.16
LIMS1-201ENST00000332345 A0A1W2PQY0 241 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 MYADML2A6NDP7 307 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 PFKFB2O60825 505 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 CABYRO75952 493 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 GNA11P29992 359 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 RBM25P49756 843 aaKnown RBP16.07■□□□□ 0.16
LIMS1-201ENST00000332345 CPT1AP50416 773 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 BEX3Q00994 111 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 UBE2SQ16763 222 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 LY6KQ17RY6 165 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 LRRC26Q2I0M4 334 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 GNPTABQ3T906 1256 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 TMEM63BQ5T3F8 832 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 PRPF38BQ5VTL8 546 aaKnown RBP16.07■□□□□ 0.16
LIMS1-201ENST00000332345 PCNX4Q63HM2 1172 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 MCTP2Q6DN12 878 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 TYW1BQ6NUM6 668 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 CCDC62Q6P9F0 684 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 C6orf50Q9HD87 102 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 STARD7Q9NQZ5 370 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 DDX41Q9UJV9 622 aaKnown RBP16.07■□□□□ 0.16
LIMS1-201ENST00000332345 PCDHA6Q9UN73 950 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 PCDHA8Q9Y5H6 950 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 MRVI1Q9Y6F6 885 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 FRMPD4Q14CM0 1322 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 LRRC37A2A6NM11 1700 aa16.07■□□□□ 0.16
LIMS1-201ENST00000332345 DNAH12Q6ZR08 3092 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 ELP1O95163 1332 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 CTAGE5O15320 804 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 KPNA6O60684 536 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 DEXIO95424 95 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 GH1P01241 217 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 IRX5P78411 483 aaPredicted RBP16.06■□□□□ 0.16
LIMS1-201ENST00000332345 SCRN1Q12765 414 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 C1orf53Q5VUE5 145 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 CCDC148Q8NFR7 591 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 IL31RAQ8NI17 732 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 BICD2Q8TD16 824 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 ZMYND12Q9H0C1 365 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 SH3GLB2Q9NR46 395 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 MYH7BA7E2Y1 1941 aa16.06■□□□□ 0.16
LIMS1-201ENST00000332345 ESYT2A0FGR8 921 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 PPFIA3O75145 1194 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 ARIH2O95376 493 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 RTP1P59025 263 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 MRPS9P82933 396 aaKnown RBP16.05■□□□□ 0.16
LIMS1-201ENST00000332345 LAMC2Q13753 1193 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 NLRX1Q86UT6 975 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 C7orf61Q8IZ16 206 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 IL27Q8NEV9 243 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 COPS5Q92905 334 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 POLR3EQ9NVU0 708 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 RTEL1Q9NZ71 1219 aa16.05■□□□□ 0.16
LIMS1-201ENST00000332345 ALPK3Q96L96 1907 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 A6NJR5 290 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 H0YGN5 161 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 RGS20O76081 388 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 PTGS1P23219 599 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 AP3B2Q13367 1082 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 SNX17Q15036 470 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 ME3Q16798 604 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 DHX37Q8IY37 1157 aaKnown RBP16.04■□□□□ 0.16
LIMS1-201ENST00000332345 FAM177A1Q8N128 213 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-201ENST00000332345 ZFP91Q96JP5 570 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-201ENST00000332345 CDHR1Q96JP9 859 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 INPP4AQ96PE3 977 aaPredicted RBP16.04■□□□□ 0.16
LIMS1-201ENST00000332345 SEZ6LQ9BYH1 1024 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 LIMCH1Q9UPQ0 1083 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 ATP11BQ9Y2G3 1177 aa16.04■□□□□ 0.16
LIMS1-201ENST00000332345 A0A0U1RQG5 324 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-201ENST00000332345 SPATA31C2B4DYI2 1134 aa16.03■□□□□ 0.16
LIMS1-201ENST00000332345 FIBPO43427 364 aa16.03■□□□□ 0.16
LIMS1-201ENST00000332345 XBP1P17861 261 aa16.03■□□□□ 0.16
LIMS1-201ENST00000332345 ICAM3P32942 547 aa16.03■□□□□ 0.16
LIMS1-201ENST00000332345 CLK2P49760 499 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms