RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 BMP8BP34820 402 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 ITGA7Q13683 1181 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 PGM5Q15124 567 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 Q6ZUG5 572 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 TMTC3Q6ZXV5 915 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 HEATR3Q7Z4Q2 680 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 PDCD2LQ9BRP1 358 aa18.55■□□□□ 0.56
HDDC2-201ENST00000318787 MAP3K20Q9NYL2 800 aaKnown RBP18.55■□□□□ 0.56
HDDC2-201ENST00000318787 A0A1W2PPC1 479 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 CABYRO75952 493 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 CCND2P30279 289 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 APOBRQ0VD83 1088 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 FAAP100Q0VG06 881 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 FAM47CQ5HY64 1035 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 IL31RAQ8NI17 732 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 PPP1R13LQ8WUF5 828 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 GPKOWQ92917 476 aaPredicted RBP eCLIP18.54■□□□□ 0.56
HDDC2-201ENST00000318787 PPP1R12CQ9BZL4 782 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 POLR3EQ9NVU0 708 aa18.54■□□□□ 0.56
HDDC2-201ENST00000318787 RBM28Q9NW13 759 aaKnown RBP18.54■□□□□ 0.56
HDDC2-201ENST00000318787 EIF3JO75822 258 aaKnown RBP18.53■□□□□ 0.56
HDDC2-201ENST00000318787 GH1P01241 217 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 SMARCA1P28370 1054 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 NKX3-2P78367 333 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 USP17L6PQ6QN14 398 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 ANKRD33Q7Z3H0 272 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 BRF1Q92994 677 aa18.53■□□□□ 0.56
HDDC2-201ENST00000318787 ITGB8P26012 769 aa18.52■□□□□ 0.55
HDDC2-201ENST00000318787 PSMA5P28066 241 aa18.52■□□□□ 0.55
HDDC2-201ENST00000318787 SAMD3Q8N6K7 520 aa18.52■□□□□ 0.55
HDDC2-201ENST00000318787 LRCH3Q96II8 777 aa18.52■□□□□ 0.55
HDDC2-201ENST00000318787 TOX2Q96NM4 488 aa18.52■□□□□ 0.55
HDDC2-201ENST00000318787 CNTNAP5Q8WYK1 1306 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 SOX1O00570 391 aaPredicted RBP18.51■□□□□ 0.55
HDDC2-201ENST00000318787 RPS6KB1P23443 525 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 METAP2P50579 478 aaKnown RBP eCLIP18.51■□□□□ 0.55
HDDC2-201ENST00000318787 CDK7P50613 346 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 PURAQ00577 322 aaKnown RBP18.51■□□□□ 0.55
HDDC2-201ENST00000318787 GHRHRQ02643 423 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 CCDC62Q6P9F0 684 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 FAM126BQ8IXS8 530 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 AFG1LQ8WV93 481 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 MTG1Q9BT17 334 aaPredicted RBP18.51■□□□□ 0.55
HDDC2-201ENST00000318787 RTEL1Q9NZ71 1219 aa18.51■□□□□ 0.55
HDDC2-201ENST00000318787 KIAA0355O15063 1070 aa18.5■□□□□ 0.55
HDDC2-201ENST00000318787 UBE2SQ16763 222 aa18.5■□□□□ 0.55
HDDC2-201ENST00000318787 DHX37Q8IY37 1157 aaKnown RBP18.5■□□□□ 0.55
HDDC2-201ENST00000318787 KCNB2Q92953 911 aa18.5■□□□□ 0.55
HDDC2-201ENST00000318787 PSTPIP2Q9H939 334 aa18.5■□□□□ 0.55
HDDC2-201ENST00000318787 MMP3P08254 477 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 CDC27P30260 824 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 NAPAP54920 295 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 FPGSQ05932 587 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 ARHGAP1Q07960 439 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 VSIG10LQ86VR7 867 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 TRPV6Q9H1D0 765 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 DDX41Q9UJV9 622 aaKnown RBP18.49■□□□□ 0.55
HDDC2-201ENST00000318787 V9GY48 417 aaPredicted RBP18.49■□□□□ 0.55
HDDC2-201ENST00000318787 GRIN2DO15399 1336 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 SCN10AQ9Y5Y9 1956 aa18.49■□□□□ 0.55
HDDC2-201ENST00000318787 A6NJR5 290 aa18.48■□□□□ 0.55
HDDC2-201ENST00000318787 B4GALT4O60513 344 aa18.48■□□□□ 0.55
HDDC2-201ENST00000318787 C9orf50Q5SZB4 431 aa18.48■□□□□ 0.55
HDDC2-201ENST00000318787 WWC2Q6AWC2 1192 aa18.48■□□□□ 0.55
HDDC2-201ENST00000318787 TBX21Q9UL17 535 aa18.48■□□□□ 0.55
HDDC2-201ENST00000318787 SPDYE3A6NKU9 549 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 MEIS2O14770 477 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 KPNA6O60684 536 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 PPFIA3O75145 1194 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 RGS20O76081 388 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 GGPS1O95749 300 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 TIMP1P01033 207 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 ADD1P35611 737 aaKnown RBP18.47■□□□□ 0.55
HDDC2-201ENST00000318787 SHHQ15465 462 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 NBPF20Q3BBV1 942 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 GNPTABQ3T906 1256 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 USP26Q9BXU7 913 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 UPF3BQ9BZI7 483 aaKnown RBP18.47■□□□□ 0.55
HDDC2-201ENST00000318787 HIPK3Q9H422 1215 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 MLXIPQ9HAP2 919 aa18.47■□□□□ 0.55
HDDC2-201ENST00000318787 TRMT13Q9NUP7 481 aaKnown RBP18.47■□□□□ 0.55
HDDC2-201ENST00000318787 CCDC196A0A1B0GTZ2 297 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 ZNF286BP0CG31 522 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 UBA1P22314 1058 aaKnown RBP18.46■□□□□ 0.55
HDDC2-201ENST00000318787 CYP2C18P33260 490 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 MRPS9P82933 396 aaKnown RBP18.46■□□□□ 0.55
HDDC2-201ENST00000318787 DGKDQ16760 1214 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 KCNV1Q6PIU1 500 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 RUFY3Q7L099 469 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 SLC43A3Q8NBI5 491 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 SPATA33Q96N06 139 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 LARP6Q9BRS8 491 aaKnown RBP18.46■□□□□ 0.55
HDDC2-201ENST00000318787 ALG1Q9BT22 464 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 ALDH8A1Q9H2A2 487 aaPredicted RBP18.46■□□□□ 0.55
HDDC2-201ENST00000318787 NOD1Q9Y239 953 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 CYP46A1Q9Y6A2 500 aa18.46■□□□□ 0.55
HDDC2-201ENST00000318787 PIK3CDO00329 1044 aa18.45■□□□□ 0.54
HDDC2-201ENST00000318787 CD4P01730 458 aa18.45■□□□□ 0.54
HDDC2-201ENST00000318787 CCL23P55773 120 aa18.45■□□□□ 0.54
HDDC2-201ENST00000318787 CCT2P78371 535 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms