RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 VSTM4Q8IW00 320 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC13Q8IYE1 715 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 SCYL3Q8IZE3 742 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 EPB41L4AQ9HCS5 686 aaPredicted RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 GSG1L2A8MUP6 293 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 BTBD19C9JJ37 291 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 ZEB2O60315 1214 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 PYGLP06737 847 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 AKR1B1P15121 316 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 EZRP15311 586 aaKnown RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 ZKSCAN1P17029 563 aaPredicted RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 RPS6KA3P51812 740 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 RBBP5Q15291 538 aaKnown RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 THEMIS2Q5TEJ8 643 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 FAM228AQ86W67 206 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 SMCR8Q8TEV9 937 aaPredicted RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 CRACR2AQ9BSW2 395 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 SLC40A1Q9NP59 571 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 AKAP11Q9UKA4 1901 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 ADD1P35611 737 aaKnown RBP10.45□□□□□ -0.74
CAPN3-201ENST00000318023 CAP2P40123 477 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 TREML2Q5T2D2 321 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 TNS4Q8IZW8 715 aa10.45□□□□□ -0.74
CAPN3-201ENST00000318023 SPDYE5A6NIY4 337 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 TMCO5BA8MYB1 307 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 AGPSO00116 658 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 HSPA8P11142 646 aaKnown RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 CTCFP49711 727 aaPredicted RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 PPFIA1Q13136 1202 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 SNCBQ16143 134 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ABCB5Q2M3G0 1257 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ACCSLQ4AC99 568 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 IFNL1Q8IU54 200 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ZNF296Q8WUU4 475 aaPredicted RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 LMBR1Q8WVP7 490 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 HOOK2Q96ED9 719 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 INTS13Q9NVM9 706 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 CEP290O15078 2479 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 EPB41L2O43491 1005 aaKnown RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 RANBP6O60518 1105 aaKnown RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 CLSTN1O94985 981 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ABL1P00519 1130 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ATP1A2P50993 1020 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 SNAPC2Q13487 334 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 MYSM1Q5VVJ2 828 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 IFNL3Q8IZI9 196 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 FMR1NBQ8N0W7 255 aaPredicted RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 C3orf20Q8ND61 904 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 ZKSCAN3Q9BRR0 538 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 PAGR1Q9BTK6 254 aa10.44□□□□□ -0.74
CAPN3-201ENST00000318023 DHX36Q9H2U1 1008 aaKnown RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 RBM8AQ9Y5S9 174 aaKnown RBP10.44□□□□□ -0.74
CAPN3-201ENST00000318023 PDHXO00330 501 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 KIF5CO60282 957 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 NMT2O60551 498 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 PFKFB2O60825 505 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 RASSF9O75901 435 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 CREB3L3Q68CJ9 461 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 SLC35F6Q8N357 371 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 TBC1D31Q96DN5 1066 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 MS4A4AQ96JQ5 239 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 ARHGAP39Q9C0H5 1083 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 CABP5Q9NP86 173 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 ZBTB21Q9ULJ3 1066 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 SLC3A2P08195 630 aaKnown RBP10.43□□□□□ -0.74
CAPN3-201ENST00000318023 CDK8P49336 464 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 SREBF2Q12772 1141 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 TOB2Q14106 344 aaPredicted RBP10.43□□□□□ -0.74
CAPN3-201ENST00000318023 TLDC1Q6P9B6 456 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 TC2NQ8N9U0 490 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 COG1Q8WTW3 980 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 MRPS27Q92552 414 aaKnown RBP10.43□□□□□ -0.74
CAPN3-201ENST00000318023 VCPKMTQ9H867 229 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 RCOR1Q9UKL0 485 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 PSME4Q14997 1843 aa10.43□□□□□ -0.74
CAPN3-201ENST00000318023 CTAGE9A4FU28 777 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 OPLAHO14841 1288 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 MYBL1P10243 752 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 SHMT1P34896 483 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 SMTNP53814 917 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TRAF1Q13077 416 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 IFT88Q13099 833 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 TBC1D25Q3MII6 688 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 ZMYM1Q5SVZ6 1142 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 BLOC1S2Q6QNY1 142 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 RASGRP2Q7LDG7 609 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 FOXP4Q8IVH2 680 aaPredicted RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 NUP88Q99567 741 aaPredicted RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 PCDHA7Q9UN72 937 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 GOLGA6BA6NDN3 693 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 MANSC4A6NHS7 340 aaPredicted RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 STX10O60499 249 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CTNND1O60716 968 aaKnown RBP10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC175P0C221 793 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 GTF2A2P52657 109 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 FKBP15Q5T1M5 1219 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 CCDC181Q5TID7 509 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 NFXL1Q6ZNB6 911 aa10.42□□□□□ -0.74
CAPN3-201ENST00000318023 B4GALNT4Q76KP1 1039 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms