RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GABPAQ06546 454 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 NBPF9Q3BBW0 867 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 SPDL1Q96EA4 605 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
SYNPO-201ENST00000307662 MFAP3P55082 362 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 AOC3Q16853 763 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 LRRC43Q8N309 656 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 GPR108Q9NPR9 543 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 PCDHA4Q9UN74 947 aa18.85■□□□□ 0.61
SYNPO-201ENST00000307662 SRPRBQ9Y5M8 271 aaKnown RBP18.85■□□□□ 0.61
SYNPO-201ENST00000307662 NOP56O00567 594 aaKnown RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 ESRRGP62508 458 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 ARMCX5Q6P1M9 558 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 TRIM50Q86XT4 487 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 AZI2Q9H6S1 392 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 XAB2Q9HCS7 855 aaKnown RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 MAD1L1Q9Y6D9 718 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 DNAJC8O75937 253 aaPredicted RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 TTC4O95801 387 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 FAM133AQ8N9E0 248 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 DEPTORQ8TB45 409 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 PLAAQ9Y263 795 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 FRMPD2Q68DX3 1309 aaPredicted RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 ADCY2Q08462 1091 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 CXorf38Q8TB03 319 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 ABTB1Q969K4 478 aaPredicted RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 EPS15L1Q9UBC2 864 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 SGK1O00141 431 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 POLR2BP30876 1174 aaKnown RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 FKBP3Q00688 224 aaKnown RBP18.84■□□□□ 0.61
SYNPO-201ENST00000307662 SEPT2Q15019 361 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 CYP4F22Q6NT55 531 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 GDAP1Q8TB36 358 aa18.84■□□□□ 0.61
SYNPO-201ENST00000307662 M0R2C6 588 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 CYP27A1Q02318 531 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 TMOD4Q9NZQ9 345 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 GOLGA8HP0CJ92 632 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 MSH2P43246 934 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 LIG4P49917 911 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 DR1Q01658 176 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 JADE1Q6IE81 842 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 TRIM11Q96F44 468 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 PAGE5Q96GU1 130 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 CFAP74Q9C0B2 1584 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 KIAA1024Q9UPX6 916 aa18.83■□□□□ 0.61
SYNPO-201ENST00000307662 RNF8O76064 485 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 CCNE1P24864 410 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 HAUS2Q9NVX0 235 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 ZBED4O75132 1171 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 GGCXP38435 758 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 BPIFB4P59827 614 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 SNX1Q13596 522 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 RINT1Q6NUQ1 792 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 MB21D1Q8N884 522 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 IGSF1Q8N6C5 1336 aa18.83■□□□□ 0.6
SYNPO-201ENST00000307662 SEMA3EO15041 775 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 PTK2Q05397 1052 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 KRT31Q15323 416 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 CPXCR1Q8N123 301 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 ZNF653Q96CK0 615 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 CENPKQ9BS16 269 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 DRC3Q9H069 523 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 OSBPL5Q9H0X9 879 aaPredicted RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 STK17AQ9UEE5 414 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 MAPK4P31152 587 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 PSMC2P35998 433 aaKnown RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 NLRX1Q86UT6 975 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 ARHGEF25Q86VW2 580 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 SIRT2Q8IXJ6 389 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 BPIFA3Q9BQP9 254 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 MIS12Q9H081 205 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 MAPK13O15264 365 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 GPC4O75487 556 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 PCCAP05165 728 aaPredicted RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 PHEXP78562 749 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 TTBK2Q6IQ55 1244 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 NSMFQ6X4W1 530 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 TTLL7Q6ZT98 887 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 TBC1D22AQ8WUA7 517 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 JDP2Q8WYK2 163 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 CCDC127Q96BQ5 260 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 SAAL1Q96ER3 474 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 TBK1Q9UHD2 729 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 H7C0C1 242 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 LMNAP02545 664 aaKnown RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 GSTA1P08263 222 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 GSTA2P09210 222 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 DLATP10515 647 aaKnown RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 ATP5OP48047 213 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 PDE1BQ01064 536 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 ZBTB38Q8NAP3 1195 aaPredicted RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 SMCR8Q8TEV9 937 aaPredicted RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 ELAC2Q9BQ52 826 aaKnown RBP18.82■□□□□ 0.6
SYNPO-201ENST00000307662 METP08581 1390 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 YEATS2Q9ULM3 1422 aa18.82■□□□□ 0.6
SYNPO-201ENST00000307662 H0YCG3 227 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 NECTIN1Q15223 517 aa18.81■□□□□ 0.6
SYNPO-201ENST00000307662 ST13P4Q8IZP2 240 aaPredicted RBP18.81■□□□□ 0.6
SYNPO-201ENST00000307662 SOS2Q07890 1332 aaPredicted RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms