RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TECPR2O15040 1411 aa5.69□□□□□ -1.5
SCN1A-201ENST00000303395 SERPINB10P48595 397 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 NPEPPSP55786 919 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 RAD51AP2Q09MP3 1159 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 KRT26Q7Z3Y9 468 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 AFAP1Q8N556 730 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 HELBQ8NG08 1087 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 GPT2Q8TD30 523 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TSC22D3Q99576 134 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 LSG1Q9H089 658 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CIDEBQ9UHD4 219 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 GUCA1BQ9UMX6 200 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SCINQ9Y6U3 715 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SERPINB3P29508 390 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CHRNA3P32297 505 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CCZ1BP86790 482 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CCZ1P86791 482 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ASIC2Q16515 512 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TTC19Q6DKK2 380 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 FAM186BQ8IYM0 893 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CSGALNACT2Q8N6G5 542 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PPP4R1Q8TF05 950 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 LRGUKQ96M69 825 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 NEUROG2Q9H2A3 272 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 QRICH2Q9H0J4 1663 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 MAPK13O15264 365 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 APOA4P06727 396 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 H2AFZP0C0S5 128 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 POLR2BP30876 1174 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 RANBP1P43487 201 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 COG7P83436 770 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PLCB3Q01970 1234 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 RIPK1Q13546 671 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 H2AFVQ71UI9 128 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PROCA1Q8NCQ7 364 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SH3TC2Q8TF17 1288 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SEPT3Q9UH03 358 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SMARCA5O60264 1052 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CLASP2O75122 1294 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 MYBL1P10243 752 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 STX2P32856 288 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TUBA4AP68366 448 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 FKBP3Q00688 224 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CUL3Q13618 768 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PPP2R5DQ14738 602 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SPDYAQ5MJ70 313 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF398Q8TD17 642 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 RNF34Q969K3 372 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CENPTQ96BT3 561 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SEL1LQ9UBV2 794 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TUBE1Q9UJT0 475 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PALLDQ8WX93 1383 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 NEDD4P46934 1319 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 EIF3HO15372 352 aaKnown RBP eCLIP5.68□□□□□ -1.56e-7■■■■□ 20.9
SCN1A-201ENST00000303395 MFAP3LO75121 409 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TOMM70O94826 608 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 BEND3Q5T5X7 828 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 FBXO38Q6PIJ6 1188 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 DPH6Q7L8W6 267 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PEX26Q7Z412 305 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ATP6V1G3Q96LB4 118 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 MAF1Q9H063 256 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PCDH11XQ9BZA7 1347 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PCDH11YQ9BZA8 1340 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 MUTP22033 750 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ATICP31939 592 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 HHATQ5VTY9 493 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 DAB2IPQ5VWQ8 1189 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 SLC30A9Q6PML9 568 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 TTC6Q86TZ1 520 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF444Q8N0Y2 327 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 LINC00301Q8NCQ3 95 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 EPN3Q9H201 632 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 NRKQ7Z2Y5 1582 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 VWDEQ8N2E2 1590 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CCDC22O60826 627 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 FSBPO95073 299 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 RPL26P61254 145 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 PPP1R7Q15435 360 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 BZW1Q7L1Q6 419 aaKnown RBP5.68□□□□□ -1.5
SCN1A-201ENST00000303395 MFN1Q8IWA4 741 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 CDAN1Q8IWY9 1227 aa5.68□□□□□ -1.5
SCN1A-201ENST00000303395 GOLGA8IPA6NC78 632 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 P4HA2O15460 535 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 MAPRE2Q15555 327 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 IFIT1BQ5T764 474 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PDXDC1Q6P996 788 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 UNC13DQ70J99 1090 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 SND1Q7KZF4 910 aaKnown RBP eCLIP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 MEIS3Q99687 375 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 ATP8A2Q9NTI2 1148 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PCDHB13Q9Y5F0 798 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 PURAQ00577 322 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 TTC38Q5R3I4 469 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 NUGGCQ68CJ6 796 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 KDM7AQ6ZMT4 941 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 RASGRP2Q7LDG7 609 aa5.67□□□□□ -1.5
SCN1A-201ENST00000303395 NOP9Q86U38 636 aaKnown RBP5.67□□□□□ -1.5
SCN1A-201ENST00000303395 CROCCP3Q8IVE0 287 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms