RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 UBOX5O94941 541 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 ATP2A2P16615 1042 aaKnown RBP11.18□□□□□ -0.62
CLDN1-201ENST00000295522 FLT3P36888 993 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 RPS6KA3P51812 740 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 HSPA2P54652 639 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 ERVK-9P63128 1117 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 USP4Q13107 963 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 RAPGEF1Q13905 1077 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 ELOA2Q8IYF1 753 aaPredicted RBP11.18□□□□□ -0.62
CLDN1-201ENST00000295522 HELBQ8NG08 1087 aaPredicted RBP11.18□□□□□ -0.62
CLDN1-201ENST00000295522 XPO6Q96QU8 1125 aaKnown RBP11.18□□□□□ -0.62
CLDN1-201ENST00000295522 PRMT1Q99873 361 aaKnown RBP11.18□□□□□ -0.62
CLDN1-201ENST00000295522 AMACRQ9UHK6 382 aa11.18□□□□□ -0.62
CLDN1-201ENST00000295522 CRYBG1Q9Y4K1 1723 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 USP31Q70CQ4 1352 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 EPHB6O15197 1021 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 PRKAB2O43741 272 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 GCP02774 474 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 SRGNP10124 158 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CHRNA2Q15822 529 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ANKRD20A2Q5SQ80 823 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ANKRD20A1Q5TYW2 823 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ANKRD20A3Q5VUR7 823 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 TTLL7Q6ZT98 887 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 FAM47EQ6ZV65 393 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 OTUD6AQ7L8S5 288 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 TRPM8Q7Z2W7 1104 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 THEMISQ8N1K5 641 aaPredicted RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CCDC155Q8N6L0 562 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ANKRD42Q8N9B4 389 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 RETREG2Q8NC44 543 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 RASGRP4Q8TDF6 673 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 LPIN2Q92539 896 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 KANSL2Q9H9L4 492 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 LUC7LQ9NQ29 371 aaKnown RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CWC25Q9NXE8 425 aaPredicted RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 TRIM33Q9UPN9 1127 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ANKARQ7Z5J8 1434 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 A0A1W2PQC6 194 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 KRIT1O00522 736 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 NKRFO15226 690 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 RPS6KA1Q15418 735 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 KLHDC7AQ5VTJ3 777 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 DAAM2Q86T65 1068 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CCDC25Q86WR0 208 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 MAB21L3Q8N8X9 362 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CABLES1Q8TDN4 633 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 FBF1Q8TES7 1133 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 MTRQ99707 1265 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 ARHGEF10LQ9HCE6 1279 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 GDF3Q9NR23 364 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.17□□□□□ -0.626e-8■■■□□ 18.8
CLDN1-201ENST00000295522 ZFATQ9P243 1243 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 DNAJC8O75937 253 aaPredicted RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 SHBGP04278 402 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 GIGYF2Q6Y7W6 1299 aaKnown RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 MAGEB6Q8N7X4 407 aa11.17□□□□□ -0.62
CLDN1-201ENST00000295522 CELF4Q9BZC1 486 aaKnown RBP11.17□□□□□ -0.62
CLDN1-201ENST00000295522 PDS5AQ29RF7 1337 aaKnown RBP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 CEMIPQ8WUJ3 1361 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 KDM6AO15550 1401 aaPredicted RBP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 SMNDC1O75940 238 aaKnown RBP eCLIP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 EPS15P42566 896 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 BIRC3Q13489 604 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 ARMC9Q7Z3E5 817 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 SH3RF1Q7Z6J0 888 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 LMNTD2Q8IXW0 634 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 ADSSL1Q8N142 457 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 TEKT4Q8WW24 435 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 KDM4CQ9H3R0 1056 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 KCNK9Q9NPC2 374 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 RGS16O15492 202 aaPredicted RBP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 PLEKHA8P1O95397 391 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 ATP4AP20648 1035 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 DRD4P21917 467 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 MEA1Q16626 185 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 AMOTQ4VCS5 1084 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 FAM114A1Q8IWE2 563 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 B4GALNT2Q8NHY0 566 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 TBC1D5Q92609 795 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 PAIP2Q9BPZ3 127 aaKnown RBP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 NSRP1Q9H0G5 558 aaKnown RBP11.16□□□□□ -0.62
CLDN1-201ENST00000295522 ADAMTS1Q9UHI8 967 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 SLC12A6Q9UHW9 1150 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 MYH13Q9UKX3 1938 aa11.16□□□□□ -0.62
CLDN1-201ENST00000295522 ORC4O43929 436 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 FCER1AP12319 257 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 NQO1P15559 274 aaKnown RBP11.15□□□□□ -0.62
CLDN1-201ENST00000295522 ANKRD40Q6AI12 368 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 FBXL16Q8N461 479 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 CCHCR1Q8TD31 782 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 MAGEC3Q8TD91 643 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 DDX17Q92841 729 aaKnown RBP11.15□□□□□ -0.62
CLDN1-201ENST00000295522 PAGR1Q9BTK6 254 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 AGAP1Q9UPQ3 857 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 LUC7L3O95232 432 aaKnown RBP11.15□□□□□ -0.62
CLDN1-201ENST00000295522 KLRC1P26715 233 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 RAB27AP51159 221 aa11.15□□□□□ -0.62
CLDN1-201ENST00000295522 CDCA2Q69YH5 1023 aaPredicted RBP11.15□□□□□ -0.62
CLDN1-201ENST00000295522 LDHAL6AQ6ZMR3 332 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms