RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 SLC35G1Q2M3R5 365 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 BRDTQ58F21 947 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 STOX1Q6ZVD7 989 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 ZNF365Q70YC5 407 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 OR6J1Q8NGC5 347 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 COPS5Q92905 334 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 RMDN3Q96TC7 470 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 CDX2Q99626 313 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 MTG1Q9BT17 334 aaPredicted RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 NOC4LQ9BVI4 516 aaKnown RBP11.32□□□□□ -0.6
VPS41-201ENST00000265745 SENP2Q9HC62 589 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 A0A0C4DFX4 3053 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 UMODL1Q5DID0 1318 aa11.32□□□□□ -0.6
VPS41-201ENST00000265745 KPNA6O60684 536 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 CFBP00751 764 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 HSD17B4P51659 736 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 GHRHRQ02643 423 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 TROAPQ12815 778 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 GRM4Q14833 912 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 SEPT14Q6ZU15 432 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 RALYLQ86SE5 291 aaKnown RBP11.31□□□□□ -0.6
VPS41-201ENST00000265745 NCOA7Q8NI08 942 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 IGDCC4Q8TDY8 1250 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 RIOX1Q9H6W3 641 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 IL23AQ9NPF7 189 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 TRMT13Q9NUP7 481 aaKnown RBP11.31□□□□□ -0.6
VPS41-201ENST00000265745 MAP3K20Q9NYL2 800 aaKnown RBP11.31□□□□□ -0.6
VPS41-201ENST00000265745 PCDHA1Q9Y5I3 950 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 PLXNA1Q9UIW2 1896 aa11.31□□□□□ -0.6
VPS41-201ENST00000265745 TMEM265A0A087WTH1 108 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 ERICH2A1L162 156 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 EIF3JO75822 258 aaKnown RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 NR3C2P08235 984 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 SUPT20HL2P0C7V6 817 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 EIF2AK2P19525 551 aaKnown RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 CCL23P55773 120 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 ANTXR2P58335 489 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 WTAPQ15007 396 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 SART3Q15020 963 aaKnown RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 LY6KQ17RY6 165 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 NBPF20Q3BBV1 942 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 ARHGEF16Q5VV41 709 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 NFRKBQ6P4R8 1299 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 PSRC1Q6PGN9 363 aaPredicted RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 CHST3Q7LGC8 479 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 MB21D2Q8IYB1 491 aaPredicted RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 SAMD3Q8N6K7 520 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 AFG1LQ8WV93 481 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 HERVK_113Q902F9 699 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 VWCEQ96DN2 955 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 WNT8AQ9H1J5 351 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 PXMP2Q9NR77 195 aa11.3□□□□□ -0.6
VPS41-201ENST00000265745 DDX41Q9UJV9 622 aaKnown RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 RBM8AQ9Y5S9 174 aaKnown RBP11.3□□□□□ -0.6
VPS41-201ENST00000265745 PNMA6FA0A0J9YX94 578 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 GRXCR1A8MXD5 290 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 CYTH3O43739 400 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 GH1P01241 217 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 FGBP02675 491 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 CYP2C9P11712 490 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 DNAJB2P25686 324 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 ARHGAP1Q07960 439 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 TMEM67Q5HYA8 995 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 CATIPQ7Z7H3 387 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 VSIG10LQ86VR7 867 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 PIGSQ96S52 555 aa11.29□□□□□ -0.6
VPS41-201ENST00000265745 CXXC1Q9P0U4 656 aaPredicted RBP11.29□□□□□ -0.6
VPS41-201ENST00000265745 DLL1O00548 723 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 RGS20O76081 388 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 MMP3P08254 477 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 HOXA13P31271 388 aaPredicted RBP11.28□□□□□ -0.6
VPS41-201ENST00000265745 PTPN11Q06124 597 aaPredicted RBP11.28□□□□□ -0.6
VPS41-201ENST00000265745 TRAF1Q13077 416 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 GRIN2CQ14957 1233 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 HOMER1Q86YM7 354 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 RPUSD2Q8IZ73 545 aaKnown RBP11.28□□□□□ -0.6
VPS41-201ENST00000265745 PPP1R13LQ8WUF5 828 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 EMID1Q96A84 441 aaPredicted RBP11.28□□□□□ -0.6
VPS41-201ENST00000265745 TIFAQ96CG3 184 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 PDCD2LQ9BRP1 358 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 MTA3Q9BTC8 594 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 LSG1Q9H089 658 aaKnown RBP11.28□□□□□ -0.6
VPS41-201ENST00000265745 ZNF576Q9H609 170 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 LTBP2Q14767 1821 aa11.28□□□□□ -0.6
VPS41-201ENST00000265745 GCOM1H8Y6P7 765 aaPredicted RBP11.27□□□□□ -0.61
VPS41-201ENST00000265745 POLR2MP0CAP2 368 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 CASTP20810 708 aaKnown RBP11.27□□□□□ -0.61
VPS41-201ENST00000265745 PBX2P40425 430 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 LAMC2Q13753 1193 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 FAM47CQ5HY64 1035 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 OTOP2Q7RTS6 562 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 TMC2Q8TDI7 906 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 MYLIPQ8WY64 445 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 KAT2BQ92831 832 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 SCLYQ96I15 445 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 ESYT1Q9BSJ8 1104 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 PBX4Q9BYU1 374 aa11.27□□□□□ -0.61
VPS41-201ENST00000265745 MTIF3Q9H2K0 278 aaKnown RBP11.27□□□□□ -0.61
VPS41-201ENST00000265745 LY9Q9HBG7 655 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms