RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 ATP1A2P50993 1020 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 GUCY2FP51841 1108 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 VAV2P52735 878 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 TUBB2AQ13885 445 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 CLEC4GQ6UXB4 293 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 CCNI2Q6ZMN8 369 aaPredicted RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 CREG2Q8IUH2 290 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 SH2D3CQ8N5H7 860 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 DDX12PQ92771 950 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 ARHGEF1Q92888 912 aaKnown RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 TUBB2BQ9BVA1 445 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 BLOC1S4Q9NUP1 217 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 MKRN1Q9UHC7 482 aaKnown RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 TNS1Q9HBL0 1735 aaKnown RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 FAM196BA6NMK8 535 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 EIF3CLB5ME19 914 aaKnown RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 AGPSO00116 658 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 TACC1O75410 805 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 MEA1Q16626 185 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 CCDC40Q4G0X9 1142 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 WDR93Q6P2C0 686 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 KCTD1Q719H9 257 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 MTMR8Q96EF0 704 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 PNMA5Q96PV4 448 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 EIF3CQ99613 913 aaKnown RBP10.13□□□□□ -0.79
MSH4-201ENST00000263187 RASSF4Q9H2L5 321 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 ACBD3Q9H3P7 528 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 CENPHQ9H3R5 247 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 SAMM50Q9Y512 469 aa10.13□□□□□ -0.79
MSH4-201ENST00000263187 USO1O60763 962 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 TM4SF1P30408 202 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 MUM1L1Q5H9M0 696 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 SPTY2D1Q68D10 685 aaPredicted RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 CNNM4Q6P4Q7 775 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 CERS3Q8IU89 383 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 SPATA4Q8NEY3 305 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 LARP4BQ92615 738 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 ZMYND12Q9H0C1 365 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 SH3GLB2Q9NR46 395 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 RBM12Q9NTZ6 932 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 SNX12Q9UMY4 172 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 RGPD3A6NKT7 1758 aaPredicted RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 RGPD4Q7Z3J3 1758 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 GOLGA6CA6NDK9 693 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 E9PMD0 336 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 GOLGA6DP0CG33 693 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 STAT3P40763 770 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 POLR2FP61218 127 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 CKAP4Q07065 602 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 SHROOM1Q2M3G4 852 aaPredicted RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 MFSD14BQ5SR56 506 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 SLC30A10Q6XR72 485 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 KRT25Q7Z3Z0 450 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 TSEN2Q8NCE0 465 aaKnown RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 OSBPL9Q96SU4 736 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 CDCA7Q9BWT1 371 aaPredicted RBP10.12□□□□□ -0.79
MSH4-201ENST00000263187 PACSIN1Q9BY11 444 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 BCAS3Q9H6U6 928 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 GOLGA6AQ9NYA3 693 aa10.12□□□□□ -0.79
MSH4-201ENST00000263187 C6orf229H3BNL8 230 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 GNA11P29992 359 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 CCT5P48643 541 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 GPSM2P81274 684 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 AMPD3Q01432 767 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 MAP9Q49MG5 647 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 SAMD1Q6SPF0 538 aaPredicted RBP10.11□□□□□ -0.79
MSH4-201ENST00000263187 DPP8Q6V1X1 898 aaPredicted RBP10.11□□□□□ -0.79
MSH4-201ENST00000263187 FAM114A1Q8IWE2 563 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 C7orf25Q9BPX7 421 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L15C9J2P7 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L13C9JLJ4 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L11C9JVI0 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L18D6R9N7 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L22D6RA61 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L17D6RBQ6 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L19D6RCP7 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L20D6RJB6 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 MEIS1O00470 390 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 KRT14P02533 472 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 SCNN1DP51172 638 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L24Q0WX57 530 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 RAPGEF1Q13905 1077 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 USP17L6PQ6QN14 398 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 EHBP1Q8NDI1 1231 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 ARL8AQ96BM9 186 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 NUP58Q9BVL2 599 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 SH2D4AQ9H788 454 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 ZEB2O60315 1214 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 ACTN1P12814 892 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 AKR1B1P15121 316 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 RFC4P35249 363 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 EHHADHQ08426 723 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 KLHL7Q8IXQ5 586 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 WDR66Q8TBY9 1149 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 LSM14BQ9BX40 385 aaKnown RBP10.11□□□□□ -0.79
MSH4-201ENST00000263187 FAM107BQ9H098 131 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 ADAMTS1Q9UHI8 967 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 CCNL1Q9UK58 526 aaPredicted RBP10.11□□□□□ -0.79
MSH4-201ENST00000263187 NFU1Q9UMS0 254 aa10.11□□□□□ -0.79
MSH4-201ENST00000263187 SIK3Q9Y2K2 1263 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms