RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.68■■□□□ 1.38
TRIM28-201ENST00000253024 CALCOCO1Q9P1Z2 691 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 DAGLAQ9Y4D2 1042 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 KIF11P52732 1056 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 CCDC40Q4G0X9 1142 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 ZFPM1Q8IX07 1006 aa23.68■■□□□ 1.38
TRIM28-201ENST00000253024 A0A1W2PQC6 194 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 ADGRF4Q8IZF3 695 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 SPZ1Q9BXG8 430 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 IRX5P78411 483 aaPredicted RBP23.67■■□□□ 1.38
TRIM28-201ENST00000253024 VWA3BQ502W6 1294 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 KRT79Q5XKE5 535 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 C10orf67Q8IYJ2 551 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 DMGDHQ9UI17 866 aaKnown RBP23.67■■□□□ 1.38
TRIM28-201ENST00000253024 ESYT3A0FGR9 886 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 VGLL3A8MV65 326 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 PSMD14O00487 310 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 SERPINB2P05120 415 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 USP14P54578 494 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 AMPD3Q01432 767 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 NFIAQ12857 509 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 C7orf25Q9BPX7 421 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 LRRC1Q9BTT6 524 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 KIAA1024Q9UPX6 916 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 PCDHA13Q9Y5I0 950 aa23.67■■□□□ 1.38
TRIM28-201ENST00000253024 EIF3JO75822 258 aaKnown RBP23.66■■□□□ 1.38
TRIM28-201ENST00000253024 GPR75-ASB3A0A0A6YYF3 556 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 POTEB3A0JP26 581 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 POTECB2RU33 542 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 ATP8B1O43520 1251 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 SLC1A4P43007 532 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 IKQ13123 557 aaPredicted RBP23.66■■□□□ 1.38
TRIM28-201ENST00000253024 TMEM266Q2M3C6 531 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 USH1GQ495M9 461 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 POTEBQ6S5H4 581 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 ZSCAN29Q8IWY8 852 aaPredicted RBP23.66■■□□□ 1.38
TRIM28-201ENST00000253024 DAGLBQ8NCG7 672 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 ZNF287Q9HBT7 754 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 MTMR4Q9NYA4 1195 aa23.66■■□□□ 1.38
TRIM28-201ENST00000253024 RNF40O75150 1001 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 RBM5P52756 815 aaKnown RBP eCLIP23.65■■□□□ 1.382e-6■■■■□ 22.7
TRIM28-201ENST00000253024 PPP4CP60510 307 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 TBC1D16Q8TBP0 767 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 ANKS1AQ92625 1134 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 DDX25Q9UHL0 483 aaKnown RBP23.65■■□□□ 1.38
TRIM28-201ENST00000253024 ZSCAN5CA6NGD5 496 aaPredicted RBP23.65■■□□□ 1.38
TRIM28-201ENST00000253024 FTCDO95954 541 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 KRT18P05783 430 aaKnown RBP23.65■■□□□ 1.38
TRIM28-201ENST00000253024 TRMT1LQ7Z2T5 733 aaKnown RBP23.65■■□□□ 1.38
TRIM28-201ENST00000253024 JMJD4Q9H9V9 463 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 USP21Q9UK80 565 aa23.65■■□□□ 1.38
TRIM28-201ENST00000253024 TXLNBQ8N3L3 684 aa23.64■■□□□ 1.38
TRIM28-201ENST00000253024 IKZF4Q9H2S9 585 aa23.64■■□□□ 1.38
TRIM28-201ENST00000253024 USP40Q9NVE5 1235 aa23.64■■□□□ 1.38
TRIM28-201ENST00000253024 G3V3G9 751 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 GGCXP38435 758 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 MAGEA1P43355 309 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 POLR2FP61218 127 aaKnown RBP23.64■■□□□ 1.37
TRIM28-201ENST00000253024 DCAF8Q5TAQ9 597 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 PRPHP41219 470 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 SND1Q7KZF4 910 aaKnown RBP eCLIP23.64■■□□□ 1.37
TRIM28-201ENST00000253024 AK8Q96MA6 479 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 EHD4Q9H223 541 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 RSPH14Q9UHP6 348 aa23.64■■□□□ 1.37
TRIM28-201ENST00000253024 KIAA1551Q9HCM1 1747 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 CYP4A11Q02928 519 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 MEA1Q16626 185 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 CCDC181Q5TID7 509 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 FAM114A1Q8IWE2 563 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 MYO1AQ9UBC5 1043 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 POTEB2H3BUK9 544 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 VAV2P52735 878 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 HERC4Q5GLZ8 1057 aaPredicted RBP23.63■■□□□ 1.37
TRIM28-201ENST00000253024 CERS5Q8N5B7 392 aa23.63■■□□□ 1.37
TRIM28-201ENST00000253024 RAPGEF1Q13905 1077 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 GALNT17Q6IS24 598 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 MTMR9Q96QG7 549 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 PCDHA12Q9UN75 941 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 POTEFA5A3E0 1075 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 EIF3CLB5ME19 914 aaKnown RBP23.62■■□□□ 1.37
TRIM28-201ENST00000253024 LAD1O00515 517 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 POTEIP0CG38 1075 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 ACTN1P12814 892 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 POTEGQ6S5H5 508 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 POTEEQ6S8J3 1075 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 KIAA0825Q8IV33 1275 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 RAD54LQ92698 747 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 MTMR8Q96EF0 704 aa23.62■■□□□ 1.37
TRIM28-201ENST00000253024 EIF3CQ99613 913 aaKnown RBP23.62■■□□□ 1.37
TRIM28-201ENST00000253024 LSM14BQ9BX40 385 aaKnown RBP23.62■■□□□ 1.37
TRIM28-201ENST00000253024 CENPPQ6IPU0 288 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 HNRNPLLQ8WVV9 542 aaKnown RBP23.61■■□□□ 1.37
TRIM28-201ENST00000253024 HAS1Q92839 578 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 SELENOOQ9BVL4 669 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 PACSIN1Q9BY11 444 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 DBNDD1Q9H9R9 158 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 PANK4Q9NVE7 773 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 BCS1LQ9Y276 419 aa23.61■■□□□ 1.37
TRIM28-201ENST00000253024 TNRC6CQ9HCJ0 1690 aaKnown RBP23.61■■□□□ 1.37
TRIM28-201ENST00000253024 PCNTO95613 3336 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms