RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FBXL16Q8N461 479 aa26.48■■□□□ 1.83
LSM4-201ENST00000252816 SLC43A3Q8NBI5 491 aa26.48■■□□□ 1.83
LSM4-201ENST00000252816 LBHD1Q9BQE6 289 aaPredicted RBP26.48■■□□□ 1.83
LSM4-201ENST00000252816 AGXT2Q9BYV1 514 aa26.48■■□□□ 1.83
LSM4-201ENST00000252816 UBE2OQ9C0C9 1292 aaKnown RBP26.48■■□□□ 1.83
LSM4-201ENST00000252816 NAP1L2Q9ULW6 460 aaPredicted RBP26.48■■□□□ 1.83
LSM4-201ENST00000252816 LTBP2Q14767 1821 aa26.48■■□□□ 1.83
LSM4-201ENST00000252816 FRMPD4Q14CM0 1322 aa26.47■■□□□ 1.83
LSM4-201ENST00000252816 DCDC2CA8MYV0 355 aa26.47■■□□□ 1.83
LSM4-201ENST00000252816 ZFP91Q96JP5 570 aaPredicted RBP26.47■■□□□ 1.83
LSM4-201ENST00000252816 DDX41Q9UJV9 622 aaKnown RBP26.47■■□□□ 1.83
LSM4-201ENST00000252816 KIAA1217Q5T5P2 1943 aa26.47■■□□□ 1.83
LSM4-201ENST00000252816 A6NJR5 290 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 PIK3CDO00329 1044 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 KIAA0355O15063 1070 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 PSMC6P62333 389 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 PURAQ00577 322 aaKnown RBP26.46■■□□□ 1.83
LSM4-201ENST00000252816 ARHGAP1Q07960 439 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 ITGA7Q13683 1181 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 HEATR3Q7Z4Q2 680 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 GPKOWQ92917 476 aaPredicted RBP eCLIP26.46■■□□□ 1.83
LSM4-201ENST00000252816 BADQ92934 168 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 ZSWIM6Q9HCJ5 1215 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 TMEM39AQ9NV64 488 aa26.46■■□□□ 1.83
LSM4-201ENST00000252816 MROH7Q68CQ1 1323 aa26.45■■□□□ 1.83
LSM4-201ENST00000252816 MYL3P08590 195 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 CCND2P30279 289 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 ADD1P35611 737 aaKnown RBP26.45■■□□□ 1.82
LSM4-201ENST00000252816 FAM126BQ8IXS8 530 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 SMARCC2Q8TAQ2 1214 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 CUL5Q93034 780 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 PSTPIP2Q9H939 334 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 POLR3EQ9NVU0 708 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 MRVI1Q9Y6F6 885 aa26.45■■□□□ 1.82
LSM4-201ENST00000252816 V9GY48 417 aaPredicted RBP26.45■■□□□ 1.82
LSM4-201ENST00000252816 GH1P01241 217 aa26.44■■□□□ 1.82
LSM4-201ENST00000252816 METAP2P50579 478 aaKnown RBP eCLIP26.44■■□□□ 1.823e-7■■■■■ 36.2
LSM4-201ENST00000252816 MRPS9P82933 396 aaKnown RBP26.44■■□□□ 1.82
LSM4-201ENST00000252816 WWC2Q6AWC2 1192 aa26.44■■□□□ 1.82
LSM4-201ENST00000252816 RUFY3Q7L099 469 aa26.44■■□□□ 1.82
LSM4-201ENST00000252816 AFG1LQ8WV93 481 aa26.44■■□□□ 1.82
LSM4-201ENST00000252816 TBX21Q9UL17 535 aa26.44■■□□□ 1.82
LSM4-201ENST00000252816 BRDTQ58F21 947 aaPredicted RBP26.43■■□□□ 1.82
LSM4-201ENST00000252816 TYW1BQ6NUM6 668 aa26.43■■□□□ 1.82
LSM4-201ENST00000252816 TDHQ8IZJ6 230 aa26.43■■□□□ 1.82
LSM4-201ENST00000252816 MTG1Q9BT17 334 aaPredicted RBP26.43■■□□□ 1.82
LSM4-201ENST00000252816 NID2Q14112 1375 aa26.43■■□□□ 1.82
LSM4-201ENST00000252816 CD4P01730 458 aa26.42■■□□□ 1.82
LSM4-201ENST00000252816 UBE2SQ16763 222 aa26.42■■□□□ 1.82
LSM4-201ENST00000252816 TM6SF1Q9BZW5 370 aa26.42■■□□□ 1.82
LSM4-201ENST00000252816 SZT2Q5T011 3432 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 SLC34A2O95436 690 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 MMP3P08254 477 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 RAG1P15918 1043 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 EVCP57679 992 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 SP2Q02086 613 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 TOB2Q14106 344 aaPredicted RBP26.41■■□□□ 1.82
LSM4-201ENST00000252816 EMID1Q96A84 441 aaPredicted RBP26.41■■□□□ 1.82
LSM4-201ENST00000252816 UPF3BQ9BZI7 483 aaKnown RBP26.41■■□□□ 1.82
LSM4-201ENST00000252816 CYP46A1Q9Y6A2 500 aa26.41■■□□□ 1.82
LSM4-201ENST00000252816 SOX1O00570 391 aaPredicted RBP26.4■■□□□ 1.82
LSM4-201ENST00000252816 KPNA6O60684 536 aa26.4■■□□□ 1.82
LSM4-201ENST00000252816 TRPV6Q9H1D0 765 aa26.4■■□□□ 1.82
LSM4-201ENST00000252816 SCN10AQ9Y5Y9 1956 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 CCDC196A0A1B0GTZ2 297 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 STXBP3O00186 592 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 TLR3O15455 904 aaKnown RBP26.39■■□□□ 1.82
LSM4-201ENST00000252816 KCNV1Q6PIU1 500 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 PPP1R13LQ8WUF5 828 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 INPP4AQ96PE3 977 aaPredicted RBP26.39■■□□□ 1.82
LSM4-201ENST00000252816 SEZ6LQ9BYH1 1024 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 RTEL1Q9NZ71 1219 aa26.39■■□□□ 1.82
LSM4-201ENST00000252816 SORBS3O60504 671 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 B4GALT4O60513 344 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 TIMP1P01033 207 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 TGFB3P10600 412 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 UBA1P22314 1058 aaKnown RBP26.38■■□□□ 1.81
LSM4-201ENST00000252816 PDIA3P30101 505 aaKnown RBP26.38■■□□□ 1.81
LSM4-201ENST00000252816 NAPAP54920 295 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 SEMA3FQ13275 785 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 LAMC2Q13753 1193 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 NBPF20Q3BBV1 942 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 CELF3Q5SZQ8 465 aaKnown RBP26.38■■□□□ 1.81
LSM4-201ENST00000252816 MYSM1Q5VVJ2 828 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 PCNX4Q63HM2 1172 aa26.38■■□□□ 1.81
LSM4-201ENST00000252816 DHX37Q8IY37 1157 aaKnown RBP26.38■■□□□ 1.81
LSM4-201ENST00000252816 ALDH8A1Q9H2A2 487 aaPredicted RBP26.38■■□□□ 1.81
LSM4-201ENST00000252816 STAM2O75886 525 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 GGPS1O95749 300 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 NTRK3Q16288 839 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 PPP1R18Q6NYC8 613 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 LARP6Q9BRS8 491 aaKnown RBP26.37■■□□□ 1.81
LSM4-201ENST00000252816 BCAS3Q9H6U6 928 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 BARHL2Q9NY43 387 aa26.37■■□□□ 1.81
LSM4-201ENST00000252816 LAMA2P24043 3122 aaKnown RBP26.37■■□□□ 1.81
LSM4-201ENST00000252816 ICAM3P32942 547 aa26.36■■□□□ 1.81
LSM4-201ENST00000252816 EPHB4P54760 987 aa26.36■■□□□ 1.81
LSM4-201ENST00000252816 PFKFB3Q16875 520 aaPredicted RBP26.36■■□□□ 1.81
LSM4-201ENST00000252816 GNPTABQ3T906 1256 aa26.36■■□□□ 1.81
LSM4-201ENST00000252816 XRRA1Q6P2D8 792 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms