RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PACSIN1Q9BY11 444 aa13.23□□□□□ -0.29
USHBP1-201ENST00000252597 PDS5AQ29RF7 1337 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 NPHP3-ACAD11A0A0J9YXS1 232 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 GOLGA6L7A0A1B0GV03 622 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 FRMD3A2A2Y4 597 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 RDXP35241 583 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 SLC16A2P36021 539 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 CALCRLQ16602 461 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 CFAP221Q4G0U5 840 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 VWA3BQ502W6 1294 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 HERC4Q5GLZ8 1057 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 PAPD7Q5XG87 772 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 EFCAB13Q8IY85 973 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 ELOA2Q8IYF1 753 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 GIMAP8Q8ND71 665 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 ZNF384Q8TF68 577 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 NSUN4Q96CB9 384 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 TSG101Q99816 390 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 SEMA6BQ9H3T3 888 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 C6orf50Q9HD87 102 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 LAMB4A4D0S4 1761 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 DISP2A7MBM2 1401 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 BCL9O00512 1426 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 COL14A1Q05707 1796 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 A0A087WUV0 522 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 LOC102724428A0A0B4J2F2 783 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 PRPF6O94906 941 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 SIK1P57059 783 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 ACTN3Q08043 901 aaPredicted RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 IFFO1Q0D2I5 559 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 KLHL30Q0D2K2 578 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 TNFRSF25Q93038 417 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 SRP68Q9UHB9 627 aaKnown RBP13.22□□□□□ -0.29
USHBP1-201ENST00000252597 USP21Q9UK80 565 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 NWD2Q9ULI1 1742 aa13.22□□□□□ -0.29
USHBP1-201ENST00000252597 LTBP4Q8N2S1 1624 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 CYTH3O43739 400 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 LDHBP07195 334 aaKnown RBP13.21□□□□□ -0.29
USHBP1-201ENST00000252597 KRT79Q5XKE5 535 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 RNPC3Q96LT9 517 aaKnown RBP13.21□□□□□ -0.29
USHBP1-201ENST00000252597 NUDT12Q9BQG2 462 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 TMEM47Q9BQJ4 181 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 EP400Q96L91 3159 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 MYMKA6NI61 221 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 KLRC4O43908 158 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 SLURP2P0DP57 97 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 SLC9C1Q4G0N8 1177 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 NEK8Q86SG6 692 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 IFT20Q8IY31 132 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 KIAA0895Q8NCT3 520 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 ZNF507Q8TCN5 953 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 DHTKD1Q96HY7 919 aaPredicted RBP13.21□□□□□ -0.29
USHBP1-201ENST00000252597 EFCC1Q9HA90 598 aa13.21□□□□□ -0.29
USHBP1-201ENST00000252597 MEIS1O00470 390 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 ACTN1P12814 892 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 TMOD1P28289 359 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 TRAPPC10P48553 1259 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 RPS8P62241 208 aaKnown RBP13.21□□□□□ -0.3
USHBP1-201ENST00000252597 TMEM266Q2M3C6 531 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 TTMPQ5BVD1 217 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 REXO1Q8N1G1 1221 aaKnown RBP13.21□□□□□ -0.3
USHBP1-201ENST00000252597 KAT2BQ92831 832 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 TSGA10Q9BZW7 698 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 SH2D4AQ9H788 454 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 IL17RBQ9NRM6 502 aa13.21□□□□□ -0.3
USHBP1-201ENST00000252597 COL16A1Q07092 1604 aaPredicted RBP13.21□□□□□ -0.3
USHBP1-201ENST00000252597 UBR2Q8IWV8 1755 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 RASSF10A6NK89 507 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 TCP1P17987 556 aaKnown RBP13.2□□□□□ -0.3
USHBP1-201ENST00000252597 ABCB4P21439 1286 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 CDR1P51861 262 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 EPHB4P54760 987 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 E2F5Q15329 346 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 RPGRIP1Q96KN7 1286 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 CCDC114Q96M63 670 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 DDX47Q9H0S4 455 aaKnown RBP13.2□□□□□ -0.3
USHBP1-201ENST00000252597 BMP2KQ9NSY1 1161 aaPredicted RBP13.2□□□□□ -0.3
USHBP1-201ENST00000252597 A0A1W2PQC6 194 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 RHOBTB3O94955 611 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 KLRC1P26715 233 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 COPB2P35606 906 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 PLS1Q14651 629 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 SFMBT2Q5VUG0 894 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 ARL6IP4Q66PJ3 421 aaKnown RBP13.2□□□□□ -0.3
USHBP1-201ENST00000252597 RCSD1Q6JBY9 416 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 CCDC170Q8IYT3 715 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 DDX12PQ92771 950 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 NLRP3Q96P20 1036 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 EYA3Q99504 573 aa13.2□□□□□ -0.3
USHBP1-201ENST00000252597 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.2□□□□□ -0.3
USHBP1-201ENST00000252597 TMEM110-MUSTN1A8MSY1 372 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 EIF3HO15372 352 aaKnown RBP eCLIP13.19□□□□□ -0.3
USHBP1-201ENST00000252597 PTF1AQ7RTS3 328 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 BRIP1Q9BX63 1249 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 ZNF652Q9Y2D9 606 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 PHLPP1O60346 1717 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 AHDC1Q5TGY3 1603 aaPredicted RBP13.19□□□□□ -0.3
USHBP1-201ENST00000252597 ITPK1Q13572 414 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 GRIK5Q16478 980 aa13.19□□□□□ -0.3
USHBP1-201ENST00000252597 CT47A1Q5JQC4 288 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms