RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ABT1Q9ULW3 272 aaKnown RBP15.06■□□□□ 0
LDLR-201ENST00000252444 NFE2L3Q9Y4A8 694 aa15.06■□□□□ 0
LDLR-201ENST00000252444 URI1O94763 535 aaPredicted RBP15.06■□□□□ 0
LDLR-201ENST00000252444 GMPSP49915 693 aaPredicted RBP15.06■□□□□ 0
LDLR-201ENST00000252444 GABPB2Q8TAK5 448 aaPredicted RBP15.06■□□□□ 0
LDLR-201ENST00000252444 TBC1D7Q9P0N9 293 aa15.06■□□□□ 0
LDLR-201ENST00000252444 SALL3Q9BXA9 1300 aa15.06■□□□□ 0
LDLR-201ENST00000252444 TNNC1P63316 161 aa15.06■□□□□ 0
LDLR-201ENST00000252444 SFMBT2Q5VUG0 894 aa15.06■□□□□ 0
LDLR-201ENST00000252444 GPC2Q8N158 579 aa15.06■□□□□ 0
LDLR-201ENST00000252444 TRERF1Q96PN7 1200 aa15.06■□□□□ 0
LDLR-201ENST00000252444 BPIFA3Q9BQP9 254 aa15.06■□□□□ 0
LDLR-201ENST00000252444 PTPREP23469 700 aa15.05■□□□□ 0
LDLR-201ENST00000252444 GTF2A2P52657 109 aa15.05■□□□□ 0
LDLR-201ENST00000252444 SCARF1Q14162 830 aa15.05■□□□□ 0
LDLR-201ENST00000252444 TEX13BQ9BXU2 312 aa15.05■□□□□ 0
LDLR-201ENST00000252444 CBX8Q9HC52 389 aa15.05■□□□□ 0
LDLR-201ENST00000252444 RNF146Q9NTX7 359 aa15.05■□□□□ 0
LDLR-201ENST00000252444 DDX39AO00148 427 aaKnown RBP15.05■□□□□ -0
LDLR-201ENST00000252444 SEL1L2Q5TEA6 688 aa15.05■□□□□ -0
LDLR-201ENST00000252444 UBL4BQ8N7F7 174 aa15.05■□□□□ -0
LDLR-201ENST00000252444 MMP19Q99542 508 aa15.05■□□□□ -0
LDLR-201ENST00000252444 IDI2Q9BXS1 227 aa15.05■□□□□ -0
LDLR-201ENST00000252444 CTAGE15A4D2H0 777 aa15.05■□□□□ -0
LDLR-201ENST00000252444 CTAGE8P0CG41 777 aa15.05■□□□□ -0
LDLR-201ENST00000252444 AP3M2P53677 418 aa15.05■□□□□ -0
LDLR-201ENST00000252444 USP50Q70EL3 339 aaPredicted RBP15.05■□□□□ -0
LDLR-201ENST00000252444 CCDC91Q7Z6B0 441 aa15.05■□□□□ -0
LDLR-201ENST00000252444 CTAGE6Q86UF2 777 aa15.05■□□□□ -0
LDLR-201ENST00000252444 CTAGE4Q8IX94 777 aa15.05■□□□□ -0
LDLR-201ENST00000252444 TRMT44Q8IYL2 757 aaKnown RBP15.05■□□□□ -0
LDLR-201ENST00000252444 RPGRIP1Q96KN7 1286 aa15.05■□□□□ -0
LDLR-201ENST00000252444 ZNF189O75820 626 aaPredicted RBP15.05■□□□□ -0
LDLR-201ENST00000252444 SP4Q02446 784 aa15.05■□□□□ -0
LDLR-201ENST00000252444 RASA3Q14644 834 aa15.05■□□□□ -0
LDLR-201ENST00000252444 CTNNBL1Q8WYA6 563 aaPredicted RBP15.05■□□□□ -0
LDLR-201ENST00000252444 GPR101Q96P66 508 aaPredicted RBP15.05■□□□□ -0
LDLR-201ENST00000252444 PSMC2P35998 433 aaKnown RBP15.04■□□□□ -0
LDLR-201ENST00000252444 GCLCP48506 637 aaPredicted RBP15.04■□□□□ -0
LDLR-201ENST00000252444 C10orf76Q5T2E6 689 aa15.04■□□□□ -0
LDLR-201ENST00000252444 SPECC1LQ69YQ0 1117 aa15.04■□□□□ -0
LDLR-201ENST00000252444 ZNF710Q8N1W2 664 aa15.04■□□□□ -0
LDLR-201ENST00000252444 GMCL1Q96IK5 515 aa15.04■□□□□ -0
LDLR-201ENST00000252444 GNG11P61952 73 aa15.04■□□□□ -0
LDLR-201ENST00000252444 ISM2Q6H9L7 571 aa15.04■□□□□ -0
LDLR-201ENST00000252444 CCDC186Q7Z3E2 898 aa15.04■□□□□ -0
LDLR-201ENST00000252444 IPO4Q8TEX9 1081 aaKnown RBP15.04■□□□□ -0
LDLR-201ENST00000252444 KAZALD1Q96I82 304 aa15.04■□□□□ -0
LDLR-201ENST00000252444 NCAPGQ9BPX3 1015 aa15.04■□□□□ -0
LDLR-201ENST00000252444 ZFYVE28Q9HCC9 887 aa15.04■□□□□ -0
LDLR-201ENST00000252444 C1orf112Q9NSG2 853 aa15.04■□□□□ -0
LDLR-201ENST00000252444 OAZ1P54368 228 aa15.04■□□□□ -0
LDLR-201ENST00000252444 CRY2Q49AN0 593 aa15.04■□□□□ -0
LDLR-201ENST00000252444 AXDND1Q5T1B0 1012 aaPredicted RBP15.04■□□□□ -0
LDLR-201ENST00000252444 PARVGQ9HBI0 331 aa15.04■□□□□ -0
LDLR-201ENST00000252444 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
LDLR-201ENST00000252444 KCNJ18B7U540 433 aa15.04■□□□□ -0
LDLR-201ENST00000252444 SPDYE6P0CI01 402 aa15.04■□□□□ -0
LDLR-201ENST00000252444 ECE1P42892 770 aa15.04■□□□□ -0
LDLR-201ENST00000252444 KIF11P52732 1056 aa15.04■□□□□ -0
LDLR-201ENST00000252444 KCNJ12Q14500 433 aa15.04■□□□□ -0
LDLR-201ENST00000252444 CLIC4Q9Y696 253 aa15.04■□□□□ -0
LDLR-201ENST00000252444 CYP2D6P10635 497 aa15.03■□□□□ -0
LDLR-201ENST00000252444 KATNAL1Q9BW62 490 aa15.03■□□□□ -0
LDLR-201ENST00000252444 RGPD1P0DJD0 1748 aa15.03■□□□□ -0
LDLR-201ENST00000252444 RASA1P20936 1047 aa15.03■□□□□ -0
LDLR-201ENST00000252444 RFX1P22670 979 aa15.03■□□□□ -0
LDLR-201ENST00000252444 ADGRF4Q8IZF3 695 aa15.03■□□□□ -0
LDLR-201ENST00000252444 RUNDC3BQ96NL0 473 aa15.03■□□□□ -0
LDLR-201ENST00000252444 CCDC77Q9BR77 488 aa15.03■□□□□ -0
LDLR-201ENST00000252444 ATP6V0A4Q9HBG4 840 aa15.03■□□□□ -0
LDLR-201ENST00000252444 DISC1Q9NRI5 854 aa15.03■□□□□ -0
LDLR-201ENST00000252444 NWD2Q9ULI1 1742 aa15.03■□□□□ -0
LDLR-201ENST00000252444 ALDH1A1P00352 501 aa15.03■□□□□ -0
LDLR-201ENST00000252444 STAT3P40763 770 aa15.03■□□□□ -0
LDLR-201ENST00000252444 SNRNP48Q6IEG0 339 aaKnown RBP15.03■□□□□ -0
LDLR-201ENST00000252444 ARMCX5Q6P1M9 558 aa15.03■□□□□ -0
LDLR-201ENST00000252444 UNC13DQ70J99 1090 aa15.03■□□□□ -0
LDLR-201ENST00000252444 KIAA1024Q9UPX6 916 aa15.03■□□□□ -0
LDLR-201ENST00000252444 P4HBP07237 508 aaKnown RBP15.03■□□□□ -0
LDLR-201ENST00000252444 EZRP15311 586 aaKnown RBP15.03■□□□□ -0
LDLR-201ENST00000252444 STX17P56962 302 aa15.03■□□□□ -0
LDLR-201ENST00000252444 EPHA7Q15375 998 aa15.03■□□□□ -0
LDLR-201ENST00000252444 TAF12Q16514 161 aa15.03■□□□□ -0
LDLR-201ENST00000252444 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
LDLR-201ENST00000252444 ENOX1Q8TC92 643 aaKnown RBP15.03■□□□□ -0
LDLR-201ENST00000252444 IGDCC4Q8TDY8 1250 aa15.03■□□□□ -0
LDLR-201ENST00000252444 ANKS1AQ92625 1134 aa15.03■□□□□ -0
LDLR-201ENST00000252444 P2RX5Q93086 422 aa15.03■□□□□ -0
LDLR-201ENST00000252444 CEP63Q96MT8 703 aa15.03■□□□□ -0
LDLR-201ENST00000252444 SEPT9Q9UHD8 586 aaPredicted RBP15.03■□□□□ -0
LDLR-201ENST00000252444 BRPF3Q9ULD4 1205 aa15.03■□□□□ -0
LDLR-201ENST00000252444 AKR1B1P15121 316 aa15.02■□□□□ -0
LDLR-201ENST00000252444 MTMR1Q13613 665 aa15.02■□□□□ -0
LDLR-201ENST00000252444 SREK1Q8WXA9 508 aaKnown RBP15.02■□□□□ -0
LDLR-201ENST00000252444 PLIN2Q99541 437 aa15.02■□□□□ -0
LDLR-201ENST00000252444 POLR2BP30876 1174 aaKnown RBP15.02■□□□□ -0
LDLR-201ENST00000252444 QRICH1Q2TAL8 776 aa15.02■□□□□ -0
LDLR-201ENST00000252444 ANKRD36BP1Q96IX9 119 aa15.02■□□□□ -0
LDLR-201ENST00000252444 RTFDC1Q9BY42 306 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms