RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 PPP2R5BQ15173 497 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 PNMA1Q8ND90 353 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 SCFD2Q8WU76 684 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 MTG1Q9BT17 334 aaPredicted RBP12.09□□□□□ -0.47
VPS50-201ENST00000251739 CPVLQ9H3G5 476 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 TRMT13Q9NUP7 481 aaKnown RBP12.09□□□□□ -0.47
VPS50-201ENST00000251739 LHX6Q9UPM6 363 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 YBX2Q9Y2T7 364 aaKnown RBP12.09□□□□□ -0.47
VPS50-201ENST00000251739 TNKSO95271 1327 aa12.09□□□□□ -0.47
VPS50-201ENST00000251739 KDM4AO75164 1064 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 ARIH2O95376 493 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 FGBP02675 491 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 GOLGA8HP0CJ92 632 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 CCL23P55773 120 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 PDE4DQ08499 809 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 ADGRE1Q14246 886 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 RAB30Q15771 203 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 CCDC62Q6P9F0 684 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 ENAHQ8N8S7 591 aaPredicted RBP12.08□□□□□ -0.48
VPS50-201ENST00000251739 OR6J1Q8NGC5 347 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 RILPL2Q969X0 211 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 MARVELD3Q96A59 401 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 ZKSCAN3Q9BRR0 538 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 DSCC1Q9BVC3 393 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 MTIF3Q9H2K0 278 aaKnown RBP12.08□□□□□ -0.48
VPS50-201ENST00000251739 RWDD1Q9H446 243 aaPredicted RBP12.08□□□□□ -0.48
VPS50-201ENST00000251739 COL20A1Q9P218 1284 aa12.08□□□□□ -0.48
VPS50-201ENST00000251739 XIRP2A4UGR9 3374 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 ZNF213O14771 459 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 SUPT20HL2P0C7V6 817 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 CYP2C9P11712 490 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 EMP3P54852 163 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 GHRHRQ02643 423 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 CDC37Q16543 378 aaPredicted RBP12.07□□□□□ -0.48
VPS50-201ENST00000251739 NBPF20Q3BBV1 942 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 USH1GQ495M9 461 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 ASPRV1Q53RT3 343 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 CCDC178Q5BJE1 867 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 B4GALNT3Q6L9W6 998 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 NFRKBQ6P4R8 1299 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 CWC27Q6UX04 472 aaKnown RBP12.07□□□□□ -0.48
VPS50-201ENST00000251739 OTOP2Q7RTS6 562 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 COPS5Q92905 334 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 SCLYQ96I15 445 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 CTAGE1Q96RT6 745 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 ZSCAN10Q96SZ4 725 aaPredicted RBP12.07□□□□□ -0.48
VPS50-201ENST00000251739 UBA5Q9GZZ9 404 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 IL25Q9H293 177 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 PRDM12Q9H4Q4 367 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 ABCB11O95342 1321 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 RAD50Q92878 1312 aa12.07□□□□□ -0.48
VPS50-201ENST00000251739 COL4A4P53420 1690 aaPredicted RBP12.06□□□□□ -0.48
VPS50-201ENST00000251739 B4E1Z4 1266 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 OPLAHO14841 1288 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 KPNA6O60684 536 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 PFKMP08237 780 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 MYL3P08590 195 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 TXNP10599 105 aaKnown RBP12.06□□□□□ -0.48
VPS50-201ENST00000251739 PTPN11Q06124 597 aaPredicted RBP12.06□□□□□ -0.48
VPS50-201ENST00000251739 ARHGAP1Q07960 439 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 NBR1Q14596 966 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 QRICH1Q2TAL8 776 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 IQCA1Q86XH1 822 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 ADGRF4Q8IZF3 695 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 SYTL5Q8TDW5 730 aaPredicted RBP12.06□□□□□ -0.48
VPS50-201ENST00000251739 TBC1D5Q92609 795 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 MPHOSPH6Q99547 160 aaKnown RBP12.06□□□□□ -0.48
VPS50-201ENST00000251739 NKX2-4Q9H2Z4 354 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 MSRAQ9UJ68 235 aa12.06□□□□□ -0.48
VPS50-201ENST00000251739 B4DLN1 442 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 HIP1O00291 1037 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 MRPL12P52815 198 aaKnown RBP12.05□□□□□ -0.48
VPS50-201ENST00000251739 TTLL4Q14679 1199 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 SEC23AQ15436 765 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 BRDTQ58F21 947 aaPredicted RBP12.05□□□□□ -0.48
VPS50-201ENST00000251739 SESTD1Q86VW0 696 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 RPUSD2Q8IZ73 545 aaKnown RBP12.05□□□□□ -0.48
VPS50-201ENST00000251739 EXOC6Q8TAG9 804 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 MTMR8Q96EF0 704 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 GAS2L1Q99501 681 aaPredicted RBP12.05□□□□□ -0.48
VPS50-201ENST00000251739 KAT14Q9H8E8 782 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 JMJD4Q9H9V9 463 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 PRDM6Q9NQX0 595 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 ZSWIM5Q9P217 1185 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 PCDHA11Q9Y5I1 949 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 SLC4A7Q9Y6M7 1214 aa12.05□□□□□ -0.48
VPS50-201ENST00000251739 MMP3P08254 477 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 RFC2P35250 354 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 FOSBP53539 338 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 RBL2Q08999 1139 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 SLC35G1Q2M3R5 365 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 TJAP1Q5JTD0 557 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 NSUN6Q8TEA1 469 aaKnown RBP12.04□□□□□ -0.48
VPS50-201ENST00000251739 PPP1R13LQ8WUF5 828 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 KAT2BQ92831 832 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 EMID1Q96A84 441 aaPredicted RBP12.04□□□□□ -0.48
VPS50-201ENST00000251739 TAAR1Q96RJ0 339 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 IWS1Q96ST2 819 aa12.04□□□□□ -0.48
VPS50-201ENST00000251739 SLC28A3Q9HAS3 691 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms