RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 UBA5Q9GZZ9 404 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 MROH8Q9H579 483 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 SERTAD1Q9UHV2 236 aa9.81□□□□□ -0.84
VPS4B-201ENST00000238497 FOCADQ5VW36 1801 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 ALAS1P13196 640 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 TPM4P67936 248 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 PPP4R3BQ5MIZ7 849 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 SHC4Q6S5L8 630 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 CHURC1Q8WUH1 139 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 EPSTI1Q96J88 318 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 STRNO43815 780 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 YEATS4O95619 227 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 SLC25A27O95847 323 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 XRCC5P13010 732 aaKnown RBP9.8□□□□□ -0.84
VPS4B-201ENST00000238497 ALX1Q15699 326 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 MORN1Q5T089 497 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 PRPF38BQ5VTL8 546 aaKnown RBP9.8□□□□□ -0.84
VPS4B-201ENST00000238497 KRI1Q8N9T8 703 aaKnown RBP9.8□□□□□ -0.84
VPS4B-201ENST00000238497 DIS3LQ8TF46 1054 aaKnown RBP9.8□□□□□ -0.84
VPS4B-201ENST00000238497 SHISA4Q96DD7 197 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 POLR3EQ9NVU0 708 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 FEM1BQ9UK73 627 aa9.8□□□□□ -0.84
VPS4B-201ENST00000238497 OFD1O75665 1012 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 MMP1P03956 469 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 ATP1A3P13637 1013 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 EARS2Q5JPH6 523 aaKnown RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 NECAB2Q7Z6G3 386 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 SGMS1Q86VZ5 419 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 CPLX3Q8WVH0 158 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 IL17RBQ9NRM6 502 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 FLRT1Q9NZU1 646 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 PCDHA5Q9Y5H7 936 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 ROBO3Q96MS0 1386 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 TNRC18O15417 2968 aaPredicted RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 MYH8P13535 1937 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 EVI5O60447 810 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 ATN1P54259 1190 aaPredicted RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 GRB14Q14449 540 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 CCDC144BQ3MJ40 725 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 NSMFQ6X4W1 530 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 SMYD4Q8IYR2 804 aaPredicted RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 PNMA1Q8ND90 353 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 ZHX1Q9UKY1 873 aaPredicted RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 TAL1P17542 331 aaPredicted RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 KRT2P35908 639 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 TTBK2Q6IQ55 1244 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 SRBD1Q8N5C6 995 aaKnown RBP9.79□□□□□ -0.84
VPS4B-201ENST00000238497 ENGASEQ8NFI3 743 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 TMEM47Q9BQJ4 181 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 CSRNP2Q9H175 543 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 BLZF1Q9H2G9 400 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 RIPK3Q9Y572 518 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 NR2E3Q9Y5X4 410 aa9.79□□□□□ -0.84
VPS4B-201ENST00000238497 TOP1P11387 765 aaKnown RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 EVCP57679 992 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 AGBL1Q96MI9 1066 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 ZNF214Q9UL59 606 aaPredicted RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 RANBP2P49792 3224 aaKnown RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 DDX60LQ5H9U9 1706 aaKnown RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 IGKV6D-41A0A0C4DH26 115 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 ORC4O43929 436 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 MARCH6O60337 910 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 CMA1P23946 247 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 AXDND1Q5T1B0 1012 aaPredicted RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 RIOX2Q8IUF8 465 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 SHCBP1Q8NEM2 672 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 CACTINQ8WUQ7 758 aaKnown RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 MKL1Q969V6 931 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 XPO4Q9C0E2 1151 aaKnown RBP9.78□□□□□ -0.84
VPS4B-201ENST00000238497 KCNF1Q9H3M0 494 aa9.78□□□□□ -0.84
VPS4B-201ENST00000238497 SKILP12757 684 aa9.77□□□□□ -0.84
VPS4B-201ENST00000238497 TOB1P50616 345 aaPredicted RBP9.77□□□□□ -0.84
VPS4B-201ENST00000238497 PAK6Q9NQU5 681 aaPredicted RBP9.77□□□□□ -0.84
VPS4B-201ENST00000238497 RNF146Q9NTX7 359 aa9.77□□□□□ -0.84
VPS4B-201ENST00000238497 PCDH10Q9P2E7 1040 aa9.77□□□□□ -0.84
VPS4B-201ENST00000238497 ANAPC4Q9UJX5 808 aa9.77□□□□□ -0.84
VPS4B-201ENST00000238497 CCPG1Q9ULG6 757 aa9.77□□□□□ -0.84
VPS4B-201ENST00000238497 ZMYND8Q9ULU4 1186 aaPredicted RBP9.77□□□□□ -0.84
VPS4B-201ENST00000238497 CCDC194A0A1B0GVG4 234 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 H0YGN5 161 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 HSP90AA2PQ14568 343 aaPredicted RBP9.77□□□□□ -0.85
VPS4B-201ENST00000238497 HS1BP3Q53T59 392 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 RCSD1Q6JBY9 416 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 FAM160B2Q86V87 743 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 C7orf61Q8IZ16 206 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 GMCL1P1Q8NEA9 526 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 SENP6Q9GZR1 1112 aaPredicted RBP9.77□□□□□ -0.85
VPS4B-201ENST00000238497 LOC285556D6RIA3 1793 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 POTEB2H3BUK9 544 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 WNT7AO00755 349 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 PRR29P0C7W0 189 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 PTGDRQ13258 359 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 RILPL1Q5EBL4 403 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 ATL3Q6DD88 541 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 FERMT2Q96AC1 680 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 PRR12Q9ULL5 1215 aa9.77□□□□□ -0.85
VPS4B-201ENST00000238497 ADAMTS3O15072 1205 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 UBASH3AP57075 661 aa9.76□□□□□ -0.85
VPS4B-201ENST00000238497 GJC2Q5T442 439 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms