RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 PRAMEF18Q5VWM3 479 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 MILR1Q7Z6M3 343 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 MIB1Q86YT6 1006 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 KLHL6Q8WZ60 621 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 SEC14L1Q92503 715 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 DPF3Q92784 378 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 RCC1LQ96I51 464 aaKnown RBP4.78□□□□□ -1.64
CDKN3-201ENST00000216414 LCORQ96JN0 433 aaPredicted RBP4.78□□□□□ -1.64
CDKN3-201ENST00000216414 MMP19Q99542 508 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 YIPF4Q9BSR8 244 aa4.78□□□□□ -1.64
CDKN3-201ENST00000216414 C22orf46C9J442 243 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 LAMTOR5O43504 91 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 B4GALT3O60512 393 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 FZD7O75084 574 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 COL9A2Q14055 689 aaPredicted RBP4.77□□□□□ -1.65
CDKN3-201ENST00000216414 SURF1Q15526 300 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 PRR31Q5SQ13 230 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 FAM126BQ8IXS8 530 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 BACH2Q9BYV9 841 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 APEX2Q9UBZ4 518 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 EFR3BQ9Y2G0 817 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 TSC22D4Q9Y3Q8 395 aa4.77□□□□□ -1.65
CDKN3-201ENST00000216414 NPEPPSL1A6NEC2 478 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 FPR2P25090 351 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 ACVRL1P37023 503 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 RACK1P63244 317 aaKnown RBP4.76□□□□□ -1.65
CDKN3-201ENST00000216414 PAK2Q13177 524 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 ICAM4Q14773 271 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 INF2Q27J81 1249 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 KIAA1211LQ6NV74 962 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF585AQ6P3V2 769 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 PLEKHH3Q7Z736 793 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 PALM2Q8IXS6 379 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 Q8N1X5 172 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 CRACR2BQ8N4Y2 399 aaPredicted RBP4.76□□□□□ -1.65
CDKN3-201ENST00000216414 C19orf47Q8N9M1 422 aaKnown RBP4.76□□□□□ -1.65
CDKN3-201ENST00000216414 COPS5Q92905 334 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 PPP1R14AQ96A00 147 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 ZSWIM3Q96MP5 696 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 CDK5RAP1Q96SZ6 601 aaKnown RBP4.76□□□□□ -1.65
CDKN3-201ENST00000216414 L2HGDHQ9H9P8 463 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 JADE2Q9NQC1 790 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 METTL5Q9NRN9 209 aaKnown RBP4.76□□□□□ -1.65
CDKN3-201ENST00000216414 PPP4R1LQ9P1A2 415 aa4.76□□□□□ -1.65
CDKN3-201ENST00000216414 ANKRD34BA5PLL1 514 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 C9orf118A6NHY6 69 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 SLC6A11P48066 632 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 GIPRP48546 466 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 NKX3-2P78367 333 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 CDSNQ15517 529 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 POMZP3Q6PJE2 187 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 VHLLQ6RSH7 139 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 OR6P1Q8NGX9 317 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 KLC2Q9H0B6 622 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 VPS11Q9H270 941 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 DEF6Q9H4E7 631 aa4.75□□□□□ -1.65
CDKN3-201ENST00000216414 NGRNQ9NPE2 291 aaKnown RBP4.75□□□□□ -1.65
CDKN3-201ENST00000216414 DDX41Q9UJV9 622 aaKnown RBP4.75□□□□□ -1.65
CDKN3-201ENST00000216414 NOP56O00567 594 aaKnown RBP4.74□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF16P17020 682 aaPredicted RBP4.74□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF28P17035 718 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 RPL11P62913 178 aaKnown RBP4.74□□□□□ -1.65
CDKN3-201ENST00000216414 ADAM9Q13443 819 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 CR1LQ2VPA4 569 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 MROH9Q5TGP6 573 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 CRIP3Q6Q6R5 217 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 CEP68Q76N32 757 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 CIR1Q86X95 450 aaPredicted RBP4.74□□□□□ -1.65
CDKN3-201ENST00000216414 BVESQ8NE79 360 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 TRMT2BQ96GJ1 504 aaKnown RBP4.74□□□□□ -1.65
CDKN3-201ENST00000216414 APBA2Q99767 749 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 TMEM168Q9H0V1 697 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 EMC9Q9Y3B6 208 aa4.74□□□□□ -1.65
CDKN3-201ENST00000216414 GPR42O15529 346 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 AMHP03971 560 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 IL13P35225 146 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 SOX9P48436 509 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 GTF2IRD2BQ6EKJ0 949 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 ARHGEF18Q6ZSZ5 1173 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 GTF2IRD2Q86UP8 949 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF654Q8IZM8 581 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF513Q8N8E2 541 aaPredicted RBP4.73□□□□□ -1.65
CDKN3-201ENST00000216414 IGDCC4Q8TDY8 1250 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 SPATA32Q96LK8 384 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 CROTQ9UKG9 612 aa4.73□□□□□ -1.65
CDKN3-201ENST00000216414 TIMM13Q9Y5L4 95 aaPredicted RBP4.73□□□□□ -1.65
CDKN3-201ENST00000216414 BCL6P41182 706 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 PPP2CBP62714 309 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 PPP2CAP67775 309 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 IQCEQ6IPM2 695 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 RIOX2Q8IUF8 465 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 TRIM59Q8IWR1 403 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 FRS2Q8WU20 508 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 CPLX3Q8WVH0 158 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 CLIC6Q96NY7 704 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 ZNF747Q9BV97 191 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 LGR4Q9BXB1 951 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 CD248Q9HCU0 757 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 CYP26B1Q9NR63 512 aa4.72□□□□□ -1.65
CDKN3-201ENST00000216414 COA3Q9Y2R0 106 aaPredicted RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms