RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ATP6V1G3Q96LB4 118 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 GSDMAQ96QA5 445 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 AP1M1Q9BXS5 423 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 NBPF3Q9H094 633 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 A0A0D9SFI3 127 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 MFAP3LO75121 409 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 KRT3P12035 628 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 ASPHQ12797 758 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 OLFML2BQ68BL8 750 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 RSBN1LQ6PCB5 846 aaPredicted RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 ZNF594Q96JF6 807 aaPredicted RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 EPN3Q9H201 632 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 TMEM60Q9H2L4 133 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 RHBDL2Q9NX52 303 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 PCDHA13Q9Y5I0 950 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 EXOC3O60645 756 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 PPP6R2O75170 966 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 A1BGP04217 495 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 ATP5JP18859 108 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 USP14P54578 494 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 KLC1Q07866 573 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 ARHGEF25Q86VW2 580 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 TRIM42Q8IWZ5 723 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 KIAA2013Q8IYS2 634 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 MYOCDQ8IZQ8 938 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 CHMP6Q96FZ7 201 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 EFHD1Q9BUP0 239 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 AZI2Q9H6S1 392 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 POLR3EQ9NVU0 708 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 MCF2P10911 925 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 HARSP12081 509 aaKnown RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 ACBD5Q5T8D3 534 aaPredicted RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 TAB3Q8N5C8 712 aaPredicted RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 LGR6Q9HBX8 967 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 RAB20Q9NX57 234 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 ZNF532Q9HCE3 1301 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 PLEKHG3A1L390 1219 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 INHBAP08476 426 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 BSPRYQ5W0U4 402 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 JADE1Q6IE81 842 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 FAM47EQ6ZV65 393 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 GFM2Q969S9 779 aaKnown RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 TRIM56Q9BRZ2 755 aaKnown RBP11.32□□□□□ -0.6
VCL-201ENST00000211998 PCDHB13Q9Y5F0 798 aa11.32□□□□□ -0.6
VCL-201ENST00000211998 ABCC4O15439 1325 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 GCNT3O95395 438 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 TMED10P49755 219 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 EIF4A1P60842 406 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 PSMC1P62191 440 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 CALCRLQ16602 461 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 NT5C3AQ9H0P0 336 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 CTDSPL2Q05D32 466 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 NBPF20Q3BBV1 942 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 DNAJC10Q8IXB1 793 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 LINC00301Q8NCQ3 95 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 ORAI2Q96SN7 254 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 SLC40A1Q9NP59 571 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 ZFP69BQ9UJL9 534 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 ZNF148Q9UQR1 794 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 PPP1R37O75864 691 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 EIF4A3P38919 411 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 LONP2Q86WA8 852 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 GRAMD1CQ8IYS0 662 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 TRAIPQ9BWF2 469 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 BIN2Q9UBW5 565 aaPredicted RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 BTBD18B2RXH4 712 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 TMEM232C9JQI7 657 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 MCF2LO15068 1137 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 ADD1P35611 737 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 NIM1KQ8IY84 436 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 MAML1Q92585 1016 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 MRPL44Q9H9J2 332 aaKnown RBP11.31□□□□□ -0.6
VCL-201ENST00000211998 ANAPC5Q9UJX4 755 aa11.31□□□□□ -0.6
VCL-201ENST00000211998 A0A0G2JND7 137 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 TAF5LO75529 589 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 PRDM1O75626 825 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 MYCLP12524 364 aaPredicted RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 ATF7P17544 494 aaPredicted RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 CNGA1P29973 690 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 PDIA3P30101 505 aaKnown RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 DR1Q01658 176 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 TCIRG1Q13488 830 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 CLEC17AQ6ZS10 378 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.3□□□□□ -0.6
VCL-201ENST00000211998 CCT8L2Q96SF2 557 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 SLC39A2Q9NP94 309 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 KDM3AQ9Y4C1 1321 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 ECEL1O95672 775 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 YWHAGP61981 247 aaKnown RBP eCLIP11.3□□□□□ -0.6
VCL-201ENST00000211998 IL1RL1Q01638 556 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 LAMB3Q13751 1172 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 SLC44A4Q53GD3 710 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 C1orf146Q5VVC0 180 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 TRIM37O94972 964 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 CA4P22748 312 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 ZAP70P43403 619 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 NEK2P51955 445 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 FLAD1Q8NFF5 587 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 SNRNP27Q8WVK2 155 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms