RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	NDL1	Q06568	189 aa		4.29	□□□□□ -1.72
VMA22	YHR060W	DIS3	Q08162	1001 aa	Known RBP	4.29	□□□□□ -1.72
VMA22	YHR060W	RUP1	Q12242	671 aa		4.29	□□□□□ -1.72
VMA22	YHR060W	RAD61	Q99359	647 aa		4.29	□□□□□ -1.72
VMA22	YHR060W	CBP1	P07252	654 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	CRM1	P30822	1084 aa	Known RBP	4.28	□□□□□ -1.72
VMA22	YHR060W	MSS51	P32335	436 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	RIM1	P32445	135 aa	Known RBP	4.28	□□□□□ -1.72
VMA22	YHR060W	EMP70	P32802	667 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	PCL5	P38794	229 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	SSO2	P39926	295 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	ELP2	P42935	788 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	EFM3	P47163	339 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	RRP46	P53256	223 aa	Predicted RBP	4.28	□□□□□ -1.72
VMA22	YHR060W	PFA5	Q03289	374 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	COQ9	Q05779	260 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	HRD3	Q05787	833 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	THI3	Q07471	609 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	CYK3	Q07533	885 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	RTT109	Q07794	436 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	Q0010	Q9ZZX9	128 aa		4.28	□□□□□ -1.72
VMA22	YHR060W	BI2	P03873	423 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	CBP2	P03874	630 aa	Predicted RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	COR1	P07256	457 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	PUT2	P07275	575 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	PET18	P25362	215 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	HSP104	P31539	908 aa	Known RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	ECM25	P32525	599 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	MIA40	P36046	403 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	YKL023W	P36103	277 aa	Known RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	CBP4	P37267	147 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	KAP104	P38217	918 aa	Known RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	TIF5	P38431	405 aa	Known RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	VPS41	P38959	992 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	MBB1	P39534	108 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	NMD5	P46970	1048 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	STB4	P50104	949 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	NUP84	P52891	726 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	ALF1	P53904	254 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	APM1	Q00776	475 aa	Predicted RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	RSM23	Q01163	450 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	RNH1	Q04740	348 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	MSC3	Q05812	728 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	PCL8	Q08966	492 aa		4.27	□□□□□ -1.73
VMA22	YHR060W	RUD3	Q12234	484 aa	Known RBP	4.27	□□□□□ -1.73
VMA22	YHR060W	RPL7A	P05737	244 aa	Known RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	CDC37	P06101	506 aa	Known RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	ERG11	P10614	530 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	ARO3	P14843	370 aa	Known RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	ELO2	P25358	347 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	BEM1	P29366	551 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YUH1	P35127	236 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	ASC1	P38011	319 aa	Known RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	EFM2	P38347	419 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
VMA22	YHR060W	TDA10	P42938	290 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YFL015C	P43578	164 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YGL117W	P53133	265 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	PIB2	P53191	635 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YMR206W	Q03695	313 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	VPS20	Q04272	221 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YLR455W	Q06188	304 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YLR413W	Q06689	675 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	THP1	Q08231	455 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	YOR389W	Q08912	624 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	RKM1	Q08961	583 aa	Predicted RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	BUG1	Q12191	341 aa		4.26	□□□□□ -1.73
VMA22	YHR060W	RPL7B	Q12213	244 aa	Known RBP	4.26	□□□□□ -1.73
VMA22	YHR060W	SUP35	P05453	685 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	LEU4	P06208	619 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	RIP1	P08067	215 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	TKL1	P23254	680 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	SGV1	P23293	657 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	DMC1	P25453	334 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	ATP3	P38077	311 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	MNN9	P39107	395 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	YMR147W	P40218	223 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	ULP2	P40537	1034 aa	Predicted RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	CIN1	P40987	1014 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	YFR018C	P43599	363 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	AIM22	P47051	409 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	DUG3	P53871	357 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	OCA2	P53949	197 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	HEF3	P53978	1044 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	SLG1	P54867	378 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	SMA1	Q02651	245 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	MSC1	Q03104	513 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	GRX3	Q03835	250 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	ADE13	Q05911	482 aa	Known RBP	4.25	□□□□□ -1.73
VMA22	YHR060W	YDL057W	Q07379	328 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	GSH2	Q08220	491 aa		4.25	□□□□□ -1.73
VMA22	YHR060W	STE3	P06783	470 aa		4.24	□□□□□ -1.73
VMA22	YHR060W	PEP4	P07267	405 aa	Known RBP	4.24	□□□□□ -1.73
VMA22	YHR060W	RHB1	P25378	209 aa		4.24	□□□□□ -1.73
VMA22	YHR060W	YJU2	P28320	278 aa	Predicted RBP	4.24	□□□□□ -1.73
VMA22	YHR060W	MTR2	P34232	184 aa	Known RBP	4.24	□□□□□ -1.73
VMA22	YHR060W	YMC2	P38087	329 aa		4.24	□□□□□ -1.73
VMA22	YHR060W	BNA4	P38169	460 aa		4.24	□□□□□ -1.73
VMA22	YHR060W	ANS1	P38832	159 aa		4.24	□□□□□ -1.73
VMA22	YHR060W	YHR210C	P38893	341 aa		4.24	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms