RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TRIM8Q9BZR9 551 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 GCOM1H8Y6P7 765 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 LUC7L3O95232 432 aaKnown RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 PMS2P54278 862 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CRYMQ14894 314 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 SAFBQ15424 915 aaKnown RBP eCLIP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 STK11Q15831 433 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 INO80DQ53TQ3 878 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC13Q8IYE1 715 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TRIM58Q8NG06 486 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TBC1D20Q96BZ9 403 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 B3GALT6Q96L58 329 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 SLC8A2Q9UPR5 921 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MAD1L1Q9Y6D9 718 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 M0R2C6 588 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 AP3D1O14617 1153 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 PPARGP37231 505 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 KLHL30Q0D2K2 578 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 C11orf91Q3C1V1 193 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 IQCEQ6IPM2 695 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CARNMT1Q8N4J0 409 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 RAPGEF4Q8WZA2 1011 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 ROGDIQ9GZN7 287 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TACC3Q9Y6A5 838 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 LRRIQ3A6PVS8 624 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MYL6P60660 151 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 NFKB2Q00653 900 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CBX3Q13185 183 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 BRSK1Q8TDC3 778 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MKL1Q969V6 931 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 KIFC2Q96AC6 838 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 RADILQ96JH8 1075 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 SENP7Q9BQF6 1050 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 EHD1Q9H4M9 534 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CHMP1AQ9HD42 196 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TSC22D2O75157 780 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 HOXD11P31277 338 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 ACTN2P35609 894 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 RAB27AP51159 221 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 COG7P83436 770 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 DR1Q01658 176 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 RASSF7Q02833 373 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 SCRN3Q0VDG4 424 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 EFCAB2Q5VUJ9 269 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TEX9Q8N6V9 391 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MUC3BQ9H195 1237 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 ZBTB40Q9NUA8 1239 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 EVC2Q86UK5 1308 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 F8W810 466 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 STXBP3O00186 592 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NOP56O00567 594 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 UBXN2AP68543 259 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 EGFLAMQ63HQ2 1017 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 TWF2Q6IBS0 349 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 KIAA2013Q8IYS2 634 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF512BQ96KM6 892 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 GORASP1Q9BQQ3 440 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 APOL5Q9BWW9 433 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PACSIN1Q9BY11 444 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RPS6KA6Q9UK32 745 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 BRWD1Q9NSI6 2320 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ERICH2A1L162 156 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 RIPK2O43353 540 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJB6O75190 326 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 LCA5LO95447 670 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PDGFRBP09619 1106 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ACTN1P12814 892 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ARL1P40616 181 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NBPF14Q5TI25 921 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ALG1LQ6GMV1 187 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CRTC1Q6UUV9 634 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC8Q9H0W5 538 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SH2D4AQ9H788 454 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 TRIM39Q9HCM9 518 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ZIM2Q9NZV7 527 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PLPP6Q8IY26 295 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJB8Q8NHS0 232 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NELL1Q92832 810 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 SLC35C2Q9NQQ7 365 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 KRT84Q9NSB2 600 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 PNMA6AP0CW24 399 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ACAP1Q15027 740 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 OLFML2BQ68BL8 750 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 VSIG1Q86XK7 387 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF483Q8TF39 744 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 YY1P25490 414 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 VPS36Q86VN1 386 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 HDAC2Q92769 488 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NOL6Q9H6R4 1146 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 LUZP4Q9P127 313 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ZBTB1Q9Y2K1 713 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 MYH6P13533 1939 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CAPN9O14815 690 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 KRT8P05787 483 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 NOP14P78316 857 aaKnown RBP3.89□□□□□ -1.79
SCN1A-221ENST00000641996 TRPC3Q13507 836 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 MAP3K11Q16584 847 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 ARHGAP11AQ6P4F7 1023 aa3.89□□□□□ -1.79
SCN1A-221ENST00000641996 CFAP161Q6P656 301 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms