RNA–Protein interactions for RNA: ENST00000641375.1

PHGDH-216, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,196 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-216ENST00000641375 HAS1Q92839 578 aa18.51■□□□□ 0.55
PHGDH-216ENST00000641375 YBX3P16989 372 aaKnown RBP eCLIP18.5■□□□□ 0.552e-7■□□□□ 9.8
PHGDH-216ENST00000641375 PTPRAP18433 802 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 CASP1P29466 404 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 HOXA13P31271 388 aaPredicted RBP18.5■□□□□ 0.55
PHGDH-216ENST00000641375 BACE1P56817 501 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 CUL4BQ13620 913 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 Q4G0T1 1027 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 PRAMEF18Q5VWM3 479 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 KRT79Q5XKE5 535 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 LDHDQ86WU2 507 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 DRC7Q8IY82 874 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 ZNF280CQ8ND82 737 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 ZKSCAN4Q969J2 545 aaPredicted RBP18.5■□□□□ 0.55
PHGDH-216ENST00000641375 KLRG1Q96E93 195 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 MMTAG2Q9BU76 263 aaKnown RBP18.5■□□□□ 0.55
PHGDH-216ENST00000641375 BLZF1Q9H2G9 400 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 EHMT1Q9H9B1 1298 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 KCNMB3Q9NPA1 279 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 PNMA2Q9UL42 364 aa18.5■□□□□ 0.55
PHGDH-216ENST00000641375 TBX3O15119 743 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 CFBP00751 764 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 AMPD3Q01432 767 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 SPP2Q13103 211 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 SAMD1Q6SPF0 538 aaPredicted RBP18.49■□□□□ 0.55
PHGDH-216ENST00000641375 ENOX1Q8TC92 643 aaKnown RBP18.49■□□□□ 0.55
PHGDH-216ENST00000641375 CDK5RAP3Q96JB5 506 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 P2RX7Q99572 595 aaKnown RBP18.49■□□□□ 0.55
PHGDH-216ENST00000641375 TANGO6Q9C0B7 1094 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 STK17AQ9UEE5 414 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 ZKSCAN5Q9Y2L8 839 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 CYP3A4P08684 503 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 FDX1P10109 184 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 VCAM1P19320 739 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 CIITAP33076 1130 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 EMILIN3Q9NT22 766 aa18.49■□□□□ 0.55
PHGDH-216ENST00000641375 POTEMA6NI47 508 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 RPN1P04843 607 aaKnown RBP18.48■□□□□ 0.55
PHGDH-216ENST00000641375 TAL1P17542 331 aaPredicted RBP18.48■□□□□ 0.55
PHGDH-216ENST00000641375 C9orf131Q5VYM1 1079 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 SPC24Q8NBT2 197 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 DCPSQ96C86 337 aaKnown RBP18.48■□□□□ 0.55
PHGDH-216ENST00000641375 PLIN2Q99541 437 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 CCPG1Q9ULG6 757 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 PHIPQ8WWQ0 1821 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 C19orf81C9J6K1 198 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 SLC26A4O43511 780 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 FLOT1O75955 427 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 NOL9Q5SY16 702 aaKnown RBP18.48■□□□□ 0.55
PHGDH-216ENST00000641375 DPY19L2Q6NUT2 758 aa18.48■□□□□ 0.55
PHGDH-216ENST00000641375 KCNB1Q14721 858 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 ZNF658Q5TYW1 1059 aaPredicted RBP18.47■□□□□ 0.55
PHGDH-216ENST00000641375 FCHSD1Q86WN1 690 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 SNX29Q8TEQ0 813 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 RPAP3Q9H6T3 665 aaPredicted RBP18.47■□□□□ 0.55
PHGDH-216ENST00000641375 SLC38A10Q9HBR0 1119 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 PPP1R9AQ9ULJ8 1098 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 ZHX2Q9Y6X8 837 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 SSC5DA1L4H1 1573 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 ZNF536O15090 1300 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 PARP14Q460N5 1801 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 ZNF76P36508 570 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 PRR16Q569H4 304 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 SULF1Q8IWU6 871 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 FAM20AQ96MK3 541 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 HSD3B7Q9H2F3 369 aa18.47■□□□□ 0.55
PHGDH-216ENST00000641375 KDM3AQ9Y4C1 1321 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 GRB10Q13322 594 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 MCF2L2Q86YR7 1114 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 ETNPPLQ8TBG4 499 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 CCDC47Q96A33 483 aaKnown RBP18.46■□□□□ 0.55
PHGDH-216ENST00000641375 C12orf42Q96LP6 360 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 GTPBP4Q9BZE4 634 aaKnown RBP18.46■□□□□ 0.55
PHGDH-216ENST00000641375 NT5C3AQ9H0P0 336 aa18.46■□□□□ 0.55
PHGDH-216ENST00000641375 CTDP1Q9Y5B0 961 aaPredicted RBP18.46■□□□□ 0.55
PHGDH-216ENST00000641375 FAM86B1E9PN63 330 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 FAM86B2P0C5J1 330 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 FMR1Q06787 632 aaKnown RBP eCLIP18.45■□□□□ 0.543e-7■■■□□ 15
PHGDH-216ENST00000641375 SV2BQ7L1I2 683 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 SAMD3Q8N6K7 520 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.45■□□□□ 0.542e-7■■□□□ 13.6
PHGDH-216ENST00000641375 AGBL1Q96MI9 1066 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 C7orf25Q9BPX7 421 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 LRRC27Q9C0I9 530 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 FANCLQ9NW38 375 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 MAP3K20Q9NYL2 800 aaKnown RBP18.45■□□□□ 0.54
PHGDH-216ENST00000641375 RABGAP1Q9Y3P9 1069 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 NFE2L3Q9Y4A8 694 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 STK24Q9Y6E0 443 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 ZBED4O75132 1171 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 FANCCQ00597 558 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 DGKZQ13574 1117 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 LRRC15Q8TF66 581 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 TBC1D5Q92609 795 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 LARP4BQ92615 738 aaKnown RBP18.45■□□□□ 0.54
PHGDH-216ENST00000641375 LENG9Q96B70 501 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 TRIM9Q9C026 710 aa18.45■□□□□ 0.54
PHGDH-216ENST00000641375 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.45■□□□□ 0.542e-6■■■■■ 31.1
PHGDH-216ENST00000641375 PPP1R3GB7ZBB8 358 aa18.44■□□□□ 0.54
PHGDH-216ENST00000641375 CBFA2T2O43439 604 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms