RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 C9orf50Q5SZB4 431 aa22■■□□□ 1.11
CLN6-221ENST00000637494 TMEM63BQ5T3F8 832 aa22■■□□□ 1.11
CLN6-221ENST00000637494 NFXL1Q6ZNB6 911 aa22■■□□□ 1.11
CLN6-221ENST00000637494 MB21D2Q8IYB1 491 aaPredicted RBP22■■□□□ 1.11
CLN6-221ENST00000637494 SLC43A3Q8NBI5 491 aa22■■□□□ 1.11
CLN6-221ENST00000637494 CTCFLQ8NI51 663 aaPredicted RBP22■■□□□ 1.11
CLN6-221ENST00000637494 TBC1D5Q92609 795 aa22■■□□□ 1.11
CLN6-221ENST00000637494 MTMR8Q96EF0 704 aa22■■□□□ 1.11
CLN6-221ENST00000637494 RNPC3Q96LT9 517 aaKnown RBP22■■□□□ 1.11
CLN6-221ENST00000637494 LSG1Q9H089 658 aaKnown RBP22■■□□□ 1.11
CLN6-221ENST00000637494 TAF6LQ9Y6J9 622 aa22■■□□□ 1.11
CLN6-221ENST00000637494 PTGS1P23219 599 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 TROAPQ12815 778 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 RNF20Q5VTR2 975 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 IGDCC4Q8TDY8 1250 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 MTG1Q9BT17 334 aaPredicted RBP21.99■■□□□ 1.11
CLN6-221ENST00000637494 PPP1R12CQ9BZL4 782 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 RIOX1Q9H6W3 641 aa21.99■■□□□ 1.11
CLN6-221ENST00000637494 PNMA6FA0A0J9YX94 578 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 CCDC69A6NI79 296 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 PRC1O43663 620 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 EIF2AK2P19525 551 aaKnown RBP21.98■■□□□ 1.11
CLN6-221ENST00000637494 ANTXR2P58335 489 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 ZNF697Q5TEC3 545 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 SEPT14Q6ZU15 432 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 TMEM87BQ96K49 555 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 PIGSQ96S52 555 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 MAP3K14Q99558 947 aa21.98■■□□□ 1.11
CLN6-221ENST00000637494 SLC27A2O14975 620 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 EIF3JO75822 258 aaKnown RBP21.97■■□□□ 1.11
CLN6-221ENST00000637494 DDAH1O94760 285 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 CD4P01730 458 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 SUPT20HL2P0C7V6 817 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 HSD17B4P51659 736 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 PSMC6P62333 389 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 FAM109BQ6ICB4 259 aaPredicted RBP21.97■■□□□ 1.11
CLN6-221ENST00000637494 Q7L0L9 218 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 SENP2Q9HC62 589 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 PXMP2Q9NR77 195 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 COL20A1Q9P218 1284 aa21.97■■□□□ 1.11
CLN6-221ENST00000637494 GCOM1H8Y6P7 765 aaPredicted RBP21.96■■□□□ 1.11
CLN6-221ENST00000637494 GH1P01241 217 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 NR3C2P08235 984 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 POLR2MP0CAP2 368 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 GNAQP50148 359 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 SMAD3P84022 425 aaKnown RBP21.96■■□□□ 1.11
CLN6-221ENST00000637494 PURAQ00577 322 aaKnown RBP21.96■■□□□ 1.11
CLN6-221ENST00000637494 CREB3L3Q68CJ9 461 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 ZNF654Q8IZM8 581 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 LZTS2Q9BRK4 669 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 HIPK3Q9H422 1215 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 LY9Q9HBG7 655 aa21.96■■□□□ 1.11
CLN6-221ENST00000637494 A6NJR5 290 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 PPP1R11O60927 126 aaPredicted RBP21.95■■□□□ 1.1
CLN6-221ENST00000637494 CALM1P0DP23 149 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 CALM2P0DP24 149 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 CALM3P0DP25 149 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 GHRHRQ02643 423 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 FAM47CQ5HY64 1035 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 COPS5Q92905 334 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 RRP36Q96EU6 259 aaKnown RBP21.95■■□□□ 1.1
CLN6-221ENST00000637494 CCDC136Q96JN2 1154 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 MTMR10Q9NXD2 777 aa21.95■■□□□ 1.1
CLN6-221ENST00000637494 SEC63Q9UGP8 760 aaKnown RBP21.95■■□□□ 1.1
CLN6-221ENST00000637494 B4GALT4O60513 344 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 MYCLP12524 364 aaPredicted RBP21.94■■□□□ 1.1
CLN6-221ENST00000637494 EPHB4P54760 987 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 NECTIN1Q15223 517 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 PSRC1Q6PGN9 363 aaPredicted RBP21.94■■□□□ 1.1
CLN6-221ENST00000637494 KCNV1Q6PIU1 500 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 TRPV6Q9H1D0 765 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 ALDH8A1Q9H2A2 487 aaPredicted RBP21.94■■□□□ 1.1
CLN6-221ENST00000637494 MRVI1Q9Y6F6 885 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 GRIN2DO15399 1336 aa21.94■■□□□ 1.1
CLN6-221ENST00000637494 CDC45O75419 566 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 ARIH2O95376 493 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 CSF2RAP15509 400 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 SMARCA1P28370 1054 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 HOXA13P31271 388 aaPredicted RBP21.93■■□□□ 1.1
CLN6-221ENST00000637494 CYP2C18P33260 490 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 LY6KQ17RY6 165 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 CCDC62Q6P9F0 684 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 SYNE3Q6ZMZ3 975 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 PIBF1Q8WXW3 757 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 SPZ1Q9BXG8 430 aa21.93■■□□□ 1.1
CLN6-221ENST00000637494 MTIF3Q9H2K0 278 aaKnown RBP21.93■■□□□ 1.1
CLN6-221ENST00000637494 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.92■■□□□ 1.1
CLN6-221ENST00000637494 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.92■■□□□ 1.1
CLN6-221ENST00000637494 SH2B2O14492 632 aaPredicted RBP21.92■■□□□ 1.1
CLN6-221ENST00000637494 OPLAHO14841 1288 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 CYTH3O43739 400 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 LIFRP42702 1097 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 PTPN11Q06124 597 aaPredicted RBP21.92■■□□□ 1.1
CLN6-221ENST00000637494 FCHSD1Q86WN1 690 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 CUL5Q93034 780 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.92■■□□□ 1.1
CLN6-221ENST00000637494 PDCD2LQ9BRP1 358 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 MYL10Q9BUA6 226 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 IL23AQ9NPF7 189 aa21.92■■□□□ 1.1
CLN6-221ENST00000637494 STXBP5LQ9Y2K9 1186 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms