RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CLMNQ96JQ2 1002 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 POTEIP0CG38 1075 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 POTEJP0CG39 1038 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 ALAS1P13196 640 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 PDXDC2PQ6P474 469 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 LUZP1Q86V48 1076 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 ANKRD13AQ8IZ07 590 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 DISC1Q9NRI5 854 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 CLEC11AQ9Y240 323 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 NFIBO00712 420 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 CYP3A4P08684 503 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 AFMP43652 599 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 COG2Q14746 738 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 TMEM266Q2M3C6 531 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 DPCR1Q3MIW9 517 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 ISM2Q6H9L7 571 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 CABP7Q86V35 215 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 REPS2Q8NFH8 660 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 ANP32BQ92688 251 aaKnown RBP19.05■□□□□ 0.64
CLN3-252ENST00000636907 GJA10Q969M2 543 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 CCDC34Q96HJ3 373 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 KCNMB3Q9NPA1 279 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 ADAMTS5Q9UNA0 930 aa19.05■□□□□ 0.64
CLN3-252ENST00000636907 PTPRFP10586 1907 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 CIITAP33076 1130 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 STAT6P42226 847 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 HSD17B4P51659 736 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 Q4G0T1 1027 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 NT5DC1Q5TFE4 455 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 RASSF8Q8NHQ8 419 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 TTC12Q9H892 705 aaPredicted RBP19.04■□□□□ 0.64
CLN3-252ENST00000636907 CCDC39Q9UFE4 941 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 PNMA2Q9UL42 364 aa19.04■□□□□ 0.64
CLN3-252ENST00000636907 FAM86B1E9PN63 330 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 MARCH6O60337 910 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 FAM86B2P0C5J1 330 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 SARSP49591 514 aaKnown RBP19.03■□□□□ 0.64
CLN3-252ENST00000636907 PPATQ06203 517 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 IQCB1Q15051 598 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 PRR16Q569H4 304 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 NAALADL2Q58DX5 795 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 MUM1L1Q5H9M0 696 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 RRAGBQ5VZM2 374 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 ERO1BQ86YB8 467 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 SMARCE1Q969G3 411 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 LENG9Q96B70 501 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 OTUD5Q96G74 571 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 MMTAG2Q9BU76 263 aaKnown RBP19.03■□□□□ 0.64
CLN3-252ENST00000636907 HOMER2Q9NSB8 354 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 LRWD1Q9UFC0 647 aa19.03■□□□□ 0.64
CLN3-252ENST00000636907 COL11A1P12107 1806 aaPredicted RBP19.03■□□□□ 0.64
CLN3-252ENST00000636907 POTEMA6NI47 508 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 SPDYE5A6NIY4 337 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 IRF6O14896 467 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 CASP1P29466 404 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 GHRHRQ02643 423 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 PDIA5Q14554 519 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 TREML2Q5T2D2 321 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 MAP1SQ66K74 1059 aaPredicted RBP19.02■□□□□ 0.64
CLN3-252ENST00000636907 MCF2L2Q86YR7 1114 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 STAMQ92783 540 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 UIMC1Q96RL1 719 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 PLIN2Q99541 437 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 RAB34Q9BZG1 259 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 MAN1B1Q9UKM7 699 aa19.02■□□□□ 0.64
CLN3-252ENST00000636907 RBBP6Q7Z6E9 1792 aaKnown RBP19.02■□□□□ 0.63
CLN3-252ENST00000636907 UBXN2AP68543 259 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 ARMC9Q7Z3E5 817 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 SPATA20Q8TB22 786 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 ETNPPLQ8TBG4 499 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 LRRC15Q8TF66 581 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 TRERF1Q96PN7 1200 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 MTRQ99707 1265 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 EHMT1Q9H9B1 1298 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 COL20A1Q9P218 1284 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 LOC285556D6RIA3 1793 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 MYPNQ86TC9 1320 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 A0A0G2JLL6 359 aaPredicted RBP19.01■□□□□ 0.63
CLN3-252ENST00000636907 SPDYE16A6NNV3 312 aaPredicted RBP19.01■□□□□ 0.63
CLN3-252ENST00000636907 TRAF5O00463 557 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 PLCG1P19174 1290 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 ZNF76P36508 570 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 OAZ1P54368 228 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 CCDC173Q0VFZ6 552 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 DPYDQ12882 1025 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 PRRT2Q7Z6L0 340 aaPredicted RBP19.01■□□□□ 0.63
CLN3-252ENST00000636907 CYP2W1Q8TAV3 490 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 NAT10Q9H0A0 1025 aaKnown RBP19.01■□□□□ 0.63
CLN3-252ENST00000636907 HOXC10Q9NYD6 342 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 ZNF214Q9UL59 606 aaPredicted RBP19.01■□□□□ 0.63
CLN3-252ENST00000636907 PCDHA12Q9UN75 941 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 RIPK3Q9Y572 518 aa19.01■□□□□ 0.63
CLN3-252ENST00000636907 SMC2O95347 1197 aa19■□□□□ 0.63
CLN3-252ENST00000636907 BMP6P22004 513 aa19■□□□□ 0.63
CLN3-252ENST00000636907 FMR1Q06787 632 aaKnown RBP eCLIP19■□□□□ 0.63
CLN3-252ENST00000636907 TMEM132BQ14DG7 1078 aa19■□□□□ 0.63
CLN3-252ENST00000636907 SNRNP48Q6IEG0 339 aaKnown RBP19■□□□□ 0.63
CLN3-252ENST00000636907 GADL1Q6ZQY3 521 aa19■□□□□ 0.63
CLN3-252ENST00000636907 DHX40Q8IX18 779 aaKnown RBP19■□□□□ 0.63
CLN3-252ENST00000636907 PPP1R9BQ96SB3 815 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms