RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ME3Q16798 604 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 WWC2Q6AWC2 1192 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 TRPV1Q8NER1 839 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 TBC1D5Q92609 795 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 LIMCH1Q9UPQ0 1083 aa20.82■□□□□ 0.92
CLN3-239ENST00000628023 hCG_1984214I3L0E3 225 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 OPLAHO14841 1288 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 PRPF3O43395 683 aaKnown RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 LARGE1O95461 756 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 IGHA2P01877 340 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 SCG2P13521 617 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 HOXA13P31271 388 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 ALDH5A1P51649 535 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 PFKFB3Q16875 520 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 ARMCX2Q7L311 632 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 TDHQ8IZJ6 230 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 SAMD3Q8N6K7 520 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 ZNF713Q8N859 430 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 NECAB1Q8N987 351 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 SYTL5Q8TDW5 730 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 FGD4Q96M96 766 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 LBHD1Q9BQE6 289 aaPredicted RBP20.81■□□□□ 0.92
CLN3-239ENST00000628023 PRKAG2Q9UGJ0 569 aa20.81■□□□□ 0.92
CLN3-239ENST00000628023 B4DLN1 442 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 HSD17B4P51659 736 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 MRPL12P52815 198 aaKnown RBP20.8■□□□□ 0.92
CLN3-239ENST00000628023 GPR153Q6NV75 609 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 PPP1R18Q6NYC8 613 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 MAMDC4Q6UXC1 1216 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 DNERQ8NFT8 737 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 SMARCC2Q8TAQ2 1214 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 GTF3C6Q969F1 213 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 LRCH3Q96II8 777 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.8■□□□□ 0.92
CLN3-239ENST00000628023 MAP3K20Q9NYL2 800 aaKnown RBP20.8■□□□□ 0.92
CLN3-239ENST00000628023 ZHX1Q9UKY1 873 aaPredicted RBP20.8■□□□□ 0.92
CLN3-239ENST00000628023 FRMPD3Q5JV73 1810 aa20.8■□□□□ 0.92
CLN3-239ENST00000628023 STXBP3O00186 592 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 SOX1O00570 391 aaPredicted RBP20.79■□□□□ 0.92
CLN3-239ENST00000628023 MYCNP04198 464 aaPredicted RBP20.79■□□□□ 0.92
CLN3-239ENST00000628023 ATN1P54259 1190 aaPredicted RBP20.79■□□□□ 0.92
CLN3-239ENST00000628023 LRIT3Q3SXY7 679 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 PRAMEF19Q5SWL8 479 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 GJC2Q5T442 439 aaPredicted RBP20.79■□□□□ 0.92
CLN3-239ENST00000628023 ARHGEF16Q5VV41 709 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 FCHSD1Q86WN1 690 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 IL27Q8NEV9 243 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 CCDC12Q8WUD4 166 aaPredicted RBP20.79■□□□□ 0.92
CLN3-239ENST00000628023 RMDN3Q96TC7 470 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 PSTPIP2Q9H939 334 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 BARHL2Q9NY43 387 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 COL20A1Q9P218 1284 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 NRBP1Q9UHY1 535 aa20.79■□□□□ 0.92
CLN3-239ENST00000628023 ASTN1O14525 1302 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 LCTP09848 1927 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 GHRHRQ02643 423 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 PDE4DQ08499 809 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 NSUN6Q8TEA1 469 aaKnown RBP20.78■□□□□ 0.92
CLN3-239ENST00000628023 ZSCAN31Q96LW9 406 aaPredicted RBP20.78■□□□□ 0.92
CLN3-239ENST00000628023 TAAR1Q96RJ0 339 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 SH2B1Q9NRF2 756 aaPredicted RBP20.78■□□□□ 0.92
CLN3-239ENST00000628023 SZT2Q5T011 3432 aa20.78■□□□□ 0.92
CLN3-239ENST00000628023 LOC102724159A0A0B4J2E5 919 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 DEXIO95424 95 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 SNAI1O95863 264 aaPredicted RBP20.77■□□□□ 0.92
CLN3-239ENST00000628023 ADCY7P51828 1080 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 MDM2Q00987 491 aaPredicted RBP20.77■□□□□ 0.92
CLN3-239ENST00000628023 PWP2Q15269 919 aaKnown RBP20.77■□□□□ 0.92
CLN3-239ENST00000628023 PKN1Q16512 942 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 ANO1Q5XXA6 986 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 ABHD16BQ9H3Z7 469 aa20.77■□□□□ 0.92
CLN3-239ENST00000628023 DDX49Q9Y6V7 483 aaKnown RBP20.77■□□□□ 0.92
CLN3-239ENST00000628023 MCM3APO60318 1980 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 SMCO2A6NFE2 343 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 EIF2AK2P19525 551 aaKnown RBP20.76■□□□□ 0.91
CLN3-239ENST00000628023 ACVR2BQ13705 512 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 TYW1BQ6NUM6 668 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 USP17L6PQ6QN14 398 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 EEPD1Q7L9B9 569 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 CCDC83Q8IWF9 413 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 CCDC148Q8NFR7 591 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 PXMP2Q9NR77 195 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 STK36Q9NRP7 1315 aa20.76■□□□□ 0.91
CLN3-239ENST00000628023 RARBP10826 455 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 RTP1P59025 263 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 UBE2SQ16763 222 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 SLC39A5Q6ZMH5 540 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 FBXO16Q8IX29 292 aaPredicted RBP20.75■□□□□ 0.91
CLN3-239ENST00000628023 GLT8D2Q9H1C3 349 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 ATP11BQ9Y2G3 1177 aa20.75■□□□□ 0.91
CLN3-239ENST00000628023 SPDYE3A6NKU9 549 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 PIK3CDO00329 1044 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 MEIS2O14770 477 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 AKR1A1P14550 325 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 MCM2P49736 904 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 IWS1Q96ST2 819 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 C6orf50Q9HD87 102 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 VTA1Q9NP79 307 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 RIC8AQ9NPQ8 531 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 XPNPEP3Q9NQH7 507 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms