RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PLCG2P16885 1265 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 ATP2B4P23634 1241 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 NAP1L1P55209 391 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 RBM17Q96I25 401 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 MYO1AQ9UBC5 1043 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 DAGLAQ9Y4D2 1042 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 WNK3Q9BYP7 1800 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 AMPD2Q01433 879 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 KIF5AQ12840 1032 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 KRT79Q5XKE5 535 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 RRAGAQ7L523 313 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 DDX12PQ92771 950 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 BLOC1S4Q9NUP1 217 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 MTMR4Q9NYA4 1195 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 ADAM21Q9UKJ8 722 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 ROBO3Q96MS0 1386 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 AHDC1Q5TGY3 1603 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 G3V3G9 751 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 CXCR5P32302 372 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 CACNB3P54284 484 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 HNRNPH2P55795 449 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 FAM193AP78312 1265 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 ZBED6P86452 979 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 GPS2Q13227 327 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 SKIDA1Q1XH10 827 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 DCAF8Q5TAQ9 597 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 NELFCDQ8IXH7 590 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 NOC3LQ8WTT2 800 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 PNMA5Q96PV4 448 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 CUEDC2Q9H467 287 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 DDX4Q9NQI0 724 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 SNED1Q8TER0 1413 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 KIAA1551Q9HCM1 1747 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 POTEB2H3BUK9 544 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 AKR1B10O60218 316 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 TOM1O60784 492 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 TCP10Q12799 353 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 CASP8Q14790 479 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 ADGRF4Q8IZF3 695 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 NDST4Q9H3R1 872 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 MLXIPQ9HAP2 919 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 NLRC4Q9NPP4 1024 aa14.39□□□□□ -0.11
CCDC88A-214ENST00000621814 ARID5AQ03989 594 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 C2orf54Q08AI8 447 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 ECM1Q16610 540 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 TRAPPC11Q7Z392 1133 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 CRACR2AQ9BSW2 395 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 NUP58Q9BVL2 599 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP40Q9NVE5 1235 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 L1RE1Q9UN81 338 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 RREB1Q92766 1687 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L10C9JJH3 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 UBAP1LF5GYI3 381 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 SNAP25P60880 206 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 TUBB2AQ13885 445 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 VWA3BQ502W6 1294 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 MSANTD4Q8NCY6 345 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 COL22A1Q8NFW1 1626 aaPredicted RBP14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 TUBB2BQ9BVA1 445 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 FAN1Q9Y2M0 1017 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L15C9J2P7 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L13C9JLJ4 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L11C9JVI0 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L18D6R9N7 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L22D6RA61 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L17D6RBQ6 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L19D6RCP7 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L20D6RJB6 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 PSMD14O00487 310 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 MOCS3O95396 460 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 IL1R1P14778 569 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L24Q0WX57 530 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 HSP90B2PQ58FF3 399 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 USP17L6PQ6QN14 398 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 CACNA2D4Q7Z3S7 1137 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 SLF2Q8IX21 1173 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 IFIH1Q9BYX4 1025 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 TTYH3Q9C0H2 523 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 PLEKHA4Q9H4M7 779 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 SMARCAL1Q9NZC9 954 aa14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 DDX25Q9UHL0 483 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-214ENST00000621814 COL5A3P25940 1745 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 NPHP3-ACAD11A0A0J9YXS1 232 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 LRRIQ3A6PVS8 624 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 MAP2K7O14733 419 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 ZNF263O14978 683 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 ZBTB22O15209 634 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 GYS1P13807 737 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 EIF4A3P38919 411 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 APBA1Q02410 837 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 SHROOM1Q2M3G4 852 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 SECISBP2LQ93073 1101 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 MTMR9Q96QG7 549 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 TRIM34Q9BYJ4 488 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 RAB34Q9BZG1 259 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 RIOX1Q9H6W3 641 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 JMJD4Q9H9V9 463 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 RAB21Q9UL25 225 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 CCDC88AQ3V6T2 1871 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms