RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 INF2Q27J81 1249 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 MRM1Q6IN84 353 aaKnown RBP8.11□□□□□ -1.11
VPS29-212ENST00000621131 CABP7Q86V35 215 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 LINC01356Q8N9X3 169 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 NPLOC4Q8TAT6 608 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 PPP1R14AQ96A00 147 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 PEX11GQ96HA9 241 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 ZNF408Q9H9D4 720 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 FFAR3O14843 346 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 SUSD5O60279 629 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 DDAH1O94760 285 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 FUCA1P04066 466 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 HOXC12P31275 282 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 CTSWP56202 376 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 ARID5AQ03989 594 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 FXNQ16595 210 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 SV2CQ496J9 727 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 MCF2L2Q86YR7 1114 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 NLGN1Q8N2Q7 840 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 USP33Q8TEY7 942 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 BTN2A2Q8WVV5 523 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 ALG3Q92685 438 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 XYLT2Q9H1B5 865 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 BCAS3Q9H6U6 928 aa8.1□□□□□ -1.11
VPS29-212ENST00000621131 MYO15BQ96JP2 1530 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 ZBTB7AO95365 584 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 PLA2G1BP04054 148 aaKnown RBP8.09□□□□□ -1.11
VPS29-212ENST00000621131 CAPNS1P04632 268 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 SLC9A5Q14940 896 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 WWC2Q6AWC2 1192 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 ZNF227Q86WZ6 799 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 SLC43A3Q8NBI5 491 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 KREMEN2Q8NCW0 462 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 FNIP1Q8TF40 1166 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 KRTAP4-9Q9BYQ8 210 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 TMEFF2Q9UIK5 374 aaPredicted RBP8.09□□□□□ -1.11
VPS29-212ENST00000621131 NUDT5Q9UKK9 219 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 CC2D2AQ9P2K1 1620 aa8.09□□□□□ -1.11
VPS29-212ENST00000621131 A0A0G2JLL6 359 aaPredicted RBP8.08□□□□□ -1.12
VPS29-212ENST00000621131 NTRK1P04629 796 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 SCG5P05408 212 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 PMLP29590 882 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 MC3RP41968 323 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 HTRA3P83110 453 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 IQCEQ6IPM2 695 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 GMLQ99445 158 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 IGSF5Q9NSI5 407 aa8.08□□□□□ -1.12
VPS29-212ENST00000621131 OTOL1A6NHN0 477 aaPredicted RBP8.07□□□□□ -1.12
VPS29-212ENST00000621131 SASH1O94885 1247 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 GJB6O95452 261 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 SF1Q15637 639 aaKnown RBP8.07□□□□□ -1.12
VPS29-212ENST00000621131 VWA3BQ502W6 1294 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 CCDC103Q8IW40 242 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 CPA5Q8WXQ8 436 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 MARCH2Q9P0N8 246 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 LRP2BPQ9P2M1 347 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 SIT1Q9Y3P8 196 aa8.07□□□□□ -1.12
VPS29-212ENST00000621131 RBM10P98175 930 aaKnown RBP8.06□□□□□ -1.12
VPS29-212ENST00000621131 E4F1Q66K89 784 aaPredicted RBP8.06□□□□□ -1.12
VPS29-212ENST00000621131 B3GNT8Q7Z7M8 397 aa8.06□□□□□ -1.12
VPS29-212ENST00000621131 FEZF2Q8TBJ5 459 aa8.06□□□□□ -1.12
VPS29-212ENST00000621131 CCDC140Q96MF4 163 aa8.06□□□□□ -1.12
VPS29-212ENST00000621131 LUC7LQ9NQ29 371 aaKnown RBP8.06□□□□□ -1.12
VPS29-212ENST00000621131 SNRPB2P08579 225 aaKnown RBP8.05□□□□□ -1.12
VPS29-212ENST00000621131 DNAJA1P31689 397 aaKnown RBP8.05□□□□□ -1.12
VPS29-212ENST00000621131 ECI1P42126 302 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 RBM25P49756 843 aaKnown RBP8.05□□□□□ -1.12
VPS29-212ENST00000621131 TESK1Q15569 626 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 SAPCD2Q86UD0 394 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 TEX2Q8IWB9 1127 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 SYT8Q8NBV8 401 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 RELTQ969Z4 430 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 FAN1Q9Y2M0 1017 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 TIMM13Q9Y5L4 95 aaPredicted RBP8.05□□□□□ -1.12
VPS29-212ENST00000621131 PMF1-BGLAPU3KQ54 211 aa8.05□□□□□ -1.12
VPS29-212ENST00000621131 C22orf46C9J442 243 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 SGSM2O43147 1006 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 CPP00450 1065 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 SLURP1P55000 103 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 DLX2Q07687 328 aaPredicted RBP8.04□□□□□ -1.12
VPS29-212ENST00000621131 CACNB2Q08289 660 aaPredicted RBP8.04□□□□□ -1.12
VPS29-212ENST00000621131 DENND5AQ6IQ26 1287 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 DIO2Q92813 273 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 SHROOM4Q9ULL8 1493 aa8.04□□□□□ -1.12
VPS29-212ENST00000621131 CUX2O14529 1486 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 B8ZZF3 427 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 PRRG2O14669 202 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 GFRA1P56159 465 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 PRSS53Q2L4Q9 553 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 ACBD5Q5T8D3 534 aaPredicted RBP8.03□□□□□ -1.12
VPS29-212ENST00000621131 EEPD1Q7L9B9 569 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 SP8Q8IXZ3 490 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 ADGRG2Q8IZP9 1017 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 Q8N1Y9 231 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 CELF2-AS1Q8N7Q2 184 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 SMARCC2Q8TAQ2 1214 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 ZNF526Q8TF50 670 aaPredicted RBP8.03□□□□□ -1.12
VPS29-212ENST00000621131 HNRNPLLQ8WVV9 542 aaKnown RBP8.03□□□□□ -1.12
VPS29-212ENST00000621131 NOX5Q96PH1 765 aa8.03□□□□□ -1.12
VPS29-212ENST00000621131 KRTAP4-2Q9BYR5 136 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms