RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LRRC27Q9C0I9 530 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 LAD1O00515 517 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 LRRC41Q15345 812 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 ZNF541Q9H0D2 1346 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 OFD1O75665 1012 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 SLC30A10Q6XR72 485 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 EEPD1Q7L9B9 569 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 FAM83AQ86UY5 434 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 SYCP3Q8IZU3 236 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 TBC1D5Q92609 795 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 TAB2Q9NYJ8 693 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 FEM1BQ9UK73 627 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 FAM13AO94988 1023 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 CSGALNACT2Q8N6G5 542 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 ELP3Q9H9T3 547 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 SAMSN1Q9NSI8 373 aaKnown RBP17.59■□□□□ 0.41
CPSF1-213ENST00000620219 SLC37A4O43826 429 aa17.58■□□□□ 0.41
CPSF1-213ENST00000620219 LARP4BQ92615 738 aaKnown RBP17.58■□□□□ 0.41
CPSF1-213ENST00000620219 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-213ENST00000620219 RBM43Q6ZSC3 357 aaKnown RBP17.58■□□□□ 0.4
CPSF1-213ENST00000620219 SNRNP48Q6IEG0 339 aaKnown RBP17.58■□□□□ 0.4
CPSF1-213ENST00000620219 TMX2Q9Y320 296 aa17.58■□□□□ 0.4
CPSF1-213ENST00000620219 UQCRHLA0A096LP55 91 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 TRAF5O00463 557 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 UQCRHP07919 91 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 ZNF577Q9BSK1 485 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 ABCB11O95342 1321 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 A0A087X0B3 334 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 SYT17Q9BSW7 474 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 SRRTQ9BXP5 876 aaKnown RBP17.57■□□□□ 0.4
CPSF1-213ENST00000620219 UTRNP46939 3433 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 UBXN1Q04323 297 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 FKBP15Q5T1M5 1219 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 CCDC65Q8IXS2 484 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 SLFN12Q8IYM2 578 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 ROBO3Q96MS0 1386 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 GCFC2P16383 781 aaKnown RBP17.57■□□□□ 0.4
CPSF1-213ENST00000620219 ZNF280CQ8ND82 737 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 AK8Q96MA6 479 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 GSDMAQ96QA5 445 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 HPSEQ9Y251 543 aa17.57■□□□□ 0.4
CPSF1-213ENST00000620219 IREB2P48200 963 aaKnown RBP17.56■□□□□ 0.4
CPSF1-213ENST00000620219 NAP1L1P55209 391 aaKnown RBP17.56■□□□□ 0.4
CPSF1-213ENST00000620219 MCF2L2Q86YR7 1114 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 HPS3Q969F9 1004 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 CACNA1SQ13698 1873 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 POTEB3A0JP26 581 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 POTECB2RU33 542 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 ADM5C9JUS6 153 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 MATR3P43243 847 aaKnown RBP eCLIP17.56■□□□□ 0.4
CPSF1-213ENST00000620219 JAG1P78504 1218 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 POTEBQ6S5H4 581 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 E9PMD0 336 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 CTTNQ14247 550 aaKnown RBP17.56■□□□□ 0.4
CPSF1-213ENST00000620219 CNNM4Q6P4Q7 775 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 PIGOQ8TEQ8 1089 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 ATG4CQ96DT6 458 aa17.56■□□□□ 0.4
CPSF1-213ENST00000620219 ZNHIT6Q9NWK9 470 aaKnown RBP17.56■□□□□ 0.4
CPSF1-213ENST00000620219 TNNT1P13805 278 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 RRP1BQ14684 758 aaKnown RBP17.55■□□□□ 0.4
CPSF1-213ENST00000620219 SLC35G1Q2M3R5 365 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 MIER3Q7Z3K6 550 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 DPF2Q92785 391 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 CTNND1O60716 968 aaKnown RBP17.55■□□□□ 0.4
CPSF1-213ENST00000620219 TRIM21P19474 475 aaKnown RBP17.55■□□□□ 0.4
CPSF1-213ENST00000620219 GSDMDP57764 484 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 TRERF1Q96PN7 1200 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 NT5C3AQ9H0P0 336 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 VPS33BQ9H267 617 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 RNF146Q9NTX7 359 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 BCORQ6W2J9 1755 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 TATDN1Q6P1N9 297 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 RMDN3Q96TC7 470 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 ARHGEF35A5YM69 484 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 SMARCA1P28370 1054 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 AP3B2Q13367 1082 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 PPP1R18Q6NYC8 613 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 RNF207Q6ZRF8 634 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 DEF6Q9H4E7 631 aa17.55■□□□□ 0.4
CPSF1-213ENST00000620219 DUOX1Q9NRD9 1551 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 GPRC5DQ9NZD1 345 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 POTEFA5A3E0 1075 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 POTEIP0CG38 1075 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 FMR1Q06787 632 aaKnown RBP eCLIP17.54■□□□□ 0.41e-6■■■□□ 16.7
CPSF1-213ENST00000620219 KMT5BQ4FZB7 885 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 POTEGQ6S5H5 508 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 POTEEQ6S8J3 1075 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 NLRX1Q86UT6 975 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 TSC1Q92574 1164 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 KIF20AO95235 890 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 CACNA2D4Q7Z3S7 1137 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 SH2D3AQ9BRG2 576 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 KCNF1Q9H3M0 494 aa17.54■□□□□ 0.4
CPSF1-213ENST00000620219 MYCT1Q8N699 235 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 SLX4Q8IY92 1834 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 UBR3Q6ZT12 1888 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 SFI1A8K8P3 1242 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 ACTN4O43707 911 aaKnown RBP17.53■□□□□ 0.4
CPSF1-213ENST00000620219 SPAG1Q07617 926 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 GMCL1Q96IK5 515 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms