RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 C3orf67Q6ZVT6 689 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 VGLL2Q8N8G2 317 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 CNBD1Q8NA66 436 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 KCNV2Q8TDN2 545 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 NAF1Q96HR8 494 aaKnown RBP11.27□□□□□ -0.61
VPS39-214ENST00000614932 MMS19Q96T76 1030 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 TMCO1Q9UM00 188 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 LEMD3Q9Y2U8 911 aa11.27□□□□□ -0.61
VPS39-214ENST00000614932 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 GMNCA6NCL1 334 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 ZNF213O14771 459 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 PRC1O43663 620 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 ADAM9Q13443 819 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 KBTBD12Q3ZCT8 623 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 CCDC92Q53HC0 331 aaPredicted RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 TRAPPC11Q7Z392 1133 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 MIGA1Q8NAN2 632 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 SMCR8Q8TEV9 937 aaPredicted RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 KCNN1Q92952 543 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 TEKT1Q969V4 418 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 NGLY1Q96IV0 654 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 PPANQ9NQ55 473 aaKnown RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 PANK4Q9NVE7 773 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 SWAP70Q9UH65 585 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 SLIT2O94813 1529 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 KLF18A0A0U1RQI7 1052 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 CFAP73A6NFT4 308 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 AKR1B15C9JRZ8 316 aaPredicted RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 CEP104O60308 925 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 CAMTA2O94983 1202 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 CKAP4Q07065 602 aaKnown RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 ZNF268Q14587 947 aaPredicted RBP11.26□□□□□ -0.61
VPS39-214ENST00000614932 SLC4A8Q2Y0W8 1093 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 CCDC70Q6NSX1 233 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 TMEM110Q86TL2 294 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 MAGEB6Q8N7X4 407 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 C8orf76Q96K31 380 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 USP28Q96RU2 1077 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 MYL10Q9BUA6 226 aa11.26□□□□□ -0.61
VPS39-214ENST00000614932 MYH15Q9Y2K3 1946 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 PRKAB2O43741 272 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 EVI5O60447 810 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 NDUFA8P51970 172 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 APBA1Q02410 837 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 TSNAXIP1Q2TAA8 658 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 GLE1Q53GS7 698 aaKnown RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 ANO7Q6IWH7 933 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 RALYLQ86SE5 291 aaKnown RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 LMNTD2Q8IXW0 634 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 NDNQ99608 321 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 ARMT1Q9H993 441 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 POLD4Q9HCU8 107 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 DMAP1Q9NPF5 467 aaPredicted RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 TUBGCP4Q9UGJ1 667 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 NEDD4P46934 1319 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 A0A1W2PQ27 194 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 A0A1W2PQ64 194 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 A0A1W2PQD8 194 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 EIF4E1BA6NMX2 242 aaKnown RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 GOLGA8BA8MQT2 603 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 POLR3DP05423 398 aaPredicted RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 ADD2P35612 726 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 SESN3P58005 492 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 CTDSPL2Q05D32 466 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 RASGRF1Q13972 1273 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 ADALQ6DHV7 355 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 SLC51AQ86UW1 340 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 TBC1D10CQ8IV04 446 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 LZICQ8WZA0 190 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 DHRS1Q96LJ7 313 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 IWS1Q96ST2 819 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 CORO1BQ9BR76 489 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 NACA2Q9H009 215 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 JAG2Q9Y219 1238 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
VPS39-214ENST00000614932 RFX7Q2KHR2 1363 aa11.25□□□□□ -0.61
VPS39-214ENST00000614932 B4E1Z4 1266 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ERVV-1B6SEH8 477 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 SMAPO00193 183 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 GSTA1P08263 222 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 PDE6AP16499 860 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ANTXR2P58335 489 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 MAP3K12Q12852 859 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 PUM3Q15397 648 aaKnown RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 APBB1IPQ7Z5R6 666 aaPredicted RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 OGFOD1Q8N543 542 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 TSEN2Q8NCE0 465 aaKnown RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 HDAC7Q8WUI4 952 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 RUBCNQ92622 972 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 KIFAP3Q92845 792 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 JAKMIP2Q96AA8 810 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 AIDAQ96BJ3 306 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ZIM3Q96PE6 472 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS39-214ENST00000614932 BRD8Q9H0E9 1235 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ALDH8A1Q9H2A2 487 aaPredicted RBP11.24□□□□□ -0.61
VPS39-214ENST00000614932 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 ABCF2Q9UG63 623 aa11.24□□□□□ -0.61
VPS39-214ENST00000614932 C5orf60A6NFR6 353 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms