RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 CASTP20810 708 aaKnown RBP11.22□□□□□ -0.61
VRK3-224ENST00000601849 KCNJ6P48051 423 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 RABGGTBP53611 331 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 ZNF543Q08ER8 600 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 AAMPQ13685 434 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 DGKHQ86XP1 1220 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 ADAMTS19Q8TE59 1207 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 IWS1Q96ST2 819 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 UHRF1Q96T88 793 aaPredicted RBP11.22□□□□□ -0.61
VRK3-224ENST00000601849 KAT14Q9H8E8 782 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 DDX49Q9Y6V7 483 aaKnown RBP11.22□□□□□ -0.61
VRK3-224ENST00000601849 XIRP2A4UGR9 3374 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 ABCB11O95342 1321 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 CCDC171Q6TFL3 1326 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 DHX16O60231 1041 aaKnown RBP11.21□□□□□ -0.61
VRK3-224ENST00000601849 BAIAP3O94812 1187 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 IQCF3P0C7M6 154 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 HAND2P61296 217 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 ADGRE1Q14246 886 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 STXBP2Q15833 593 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 USH1GQ495M9 461 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 TMEM63BQ5T3F8 832 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 SLC30A10Q6XR72 485 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 CAGE1Q8TC20 777 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 NSUN6Q8TEA1 469 aaKnown RBP11.21□□□□□ -0.61
VRK3-224ENST00000601849 CLEC4DQ8WXI8 215 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 FAM227BQ96M60 508 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 ZBED2Q9BTP6 218 aa11.21□□□□□ -0.61
VRK3-224ENST00000601849 YBX2Q9Y2T7 364 aaKnown RBP11.21□□□□□ -0.61
VRK3-224ENST00000601849 HIP1O00291 1037 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 FOXP2O15409 715 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 GH1P01241 217 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 EDNRBP24530 442 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 TRAF1Q13077 416 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 HDAC1Q13547 482 aaPredicted RBP11.2□□□□□ -0.62
VRK3-224ENST00000601849 PTGISQ16647 500 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 DGKDQ16760 1214 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 RASGRP2Q7LDG7 609 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 PNMA1Q8ND90 353 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 AFAP1L1Q8TED9 768 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 KATNAL1Q9BW62 490 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 RWDD1Q9H446 243 aaPredicted RBP11.2□□□□□ -0.62
VRK3-224ENST00000601849 CTNNA3Q9UI47 895 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 COG5Q9UP83 839 aa11.2□□□□□ -0.62
VRK3-224ENST00000601849 MRPL11Q9Y3B7 192 aaKnown RBP11.2□□□□□ -0.62
VRK3-224ENST00000601849 SALL3Q9BXA9 1300 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 A0A0D9SFI3 127 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 TLL1O43897 1013 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 EFCAB14O75071 495 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 EIF3JO75822 258 aaKnown RBP11.19□□□□□ -0.62
VRK3-224ENST00000601849 CA3P07451 260 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 SNHG28P0DPA3 235 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 MYOGP15173 224 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 POU3F3P20264 500 aaPredicted RBP11.19□□□□□ -0.62
VRK3-224ENST00000601849 COL9A1P20849 921 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 PTGS1P23219 599 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 RRP1P56182 461 aaKnown RBP11.19□□□□□ -0.62
VRK3-224ENST00000601849 NMIQ13287 307 aaPredicted RBP11.19□□□□□ -0.62
VRK3-224ENST00000601849 IMMTQ16891 758 aaKnown RBP11.19□□□□□ -0.62
VRK3-224ENST00000601849 ASPRV1Q53RT3 343 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 ARHGEF16Q5VV41 709 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 KCNV1Q6PIU1 500 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 SEPT14Q6ZU15 432 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 C7orf31Q8N865 590 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 RMDN3Q96TC7 470 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 UBA5Q9GZZ9 404 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 DIAPH3Q9NSV4 1193 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 CHD9Q3L8U1 2897 aa11.19□□□□□ -0.62
VRK3-224ENST00000601849 PARP1P09874 1014 aaKnown RBP11.18□□□□□ -0.62
VRK3-224ENST00000601849 GOLGA8HP0CJ92 632 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 SDSP20132 328 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 LAMC2Q13753 1193 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 CDC37Q16543 378 aaPredicted RBP11.18□□□□□ -0.62
VRK3-224ENST00000601849 CHST3Q7LGC8 479 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 FBXO11Q86XK2 927 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 HERC6Q8IVU3 1022 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 ADGRF4Q8IZF3 695 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 AFG1LQ8WV93 481 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 ARNTL2Q8WYA1 636 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 COPS5Q92905 334 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 CRBNQ96SW2 442 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 ZKSCAN3Q9BRR0 538 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 UBAC1Q9BSL1 405 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 C1QTNF1Q9BXJ1 281 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 KRT23Q9C075 422 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 LNPKQ9C0E8 428 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 CNNM2Q9H8M5 875 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 VAT1LQ9HCJ6 419 aa11.18□□□□□ -0.62
VRK3-224ENST00000601849 MAP3K20Q9NYL2 800 aaKnown RBP11.18□□□□□ -0.62
VRK3-224ENST00000601849 KDM4AO75164 1064 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 SELPP16109 830 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 IKBKEQ14164 716 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 LY6KQ17RY6 165 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 SESTD1Q86VW0 696 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 DHX37Q8IY37 1157 aaKnown RBP11.17□□□□□ -0.62
VRK3-224ENST00000601849 SAMD3Q8N6K7 520 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 TAAR1Q96RJ0 339 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 ZSCAN10Q96SZ4 725 aaPredicted RBP11.17□□□□□ -0.62
VRK3-224ENST00000601849 CERS4Q9HA82 394 aa11.17□□□□□ -0.62
VRK3-224ENST00000601849 LMCD1Q9NZU5 365 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms