RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ST3GAL1Q11201 340 aa22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 PFKFB3Q16875 520 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 RMDN3Q96TC7 470 aa22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 ADAMTS3O15072 1205 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 CTAGE5O15320 804 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 PFKFB2O60825 505 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 ADAMTS4O75173 837 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 NKX3-2P78367 333 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 IRX5P78411 483 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 ME3Q16798 604 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 USP17L6PQ6QN14 398 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 EEPD1Q7L9B9 569 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 IL31RAQ8NI17 732 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 BACH2Q9BYV9 841 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 VTA1Q9NP79 307 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 BARHL2Q9NY43 387 aa22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 GNEQ9Y223 722 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-221ENST00000599833 GCOM1H8Y6P7 765 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 PPFIA3O75145 1194 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 FARP2O94887 1054 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 CTDNEP1O95476 244 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 POLR2MP0CAP2 368 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 ADCYAP1R1P41586 468 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 STK3Q13188 491 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 CCSAPQ6IQ19 270 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 HEATR3Q7Z4Q2 680 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 NSUN6Q8TEA1 469 aaKnown RBP22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 TBC1D32Q96NH3 1257 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 PDCD2LQ9BRP1 358 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 RNF26Q9BY78 433 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 FAM184BQ9ULE4 1060 aa22.49■■□□□ 1.19
SHKBP1-221ENST00000599833 RGS20O76081 388 aa22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 SMPD1P17405 629 aa22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 EIF2AK2P19525 551 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 PPP1R18Q6NYC8 613 aa22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 PAWRQ96IZ0 340 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 IWS1Q96ST2 819 aa22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 UPF3AQ9H1J1 476 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 SYNRGQ9UMZ2 1314 aa22.48■■□□□ 1.19
SHKBP1-221ENST00000599833 MYADML2A6NDP7 307 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 DUSP11O75319 330 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 ARIH2O95376 493 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 SCG2P13521 617 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 CLK2P49760 499 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 PGM5Q15124 567 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 ANKRD1Q15327 319 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 LRRC41Q15345 812 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 UBE2SQ16763 222 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 KLHDC9Q8NEP7 349 aa22.47■■□□□ 1.19
SHKBP1-221ENST00000599833 hCG_1984214I3L0E3 225 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 DTNBO60941 627 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 PGK1P00558 417 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 NR3C2P08235 984 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 RARBP10826 455 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 GJC2Q5T442 439 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 VSIG10LQ86VR7 867 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 ZNF713Q8N859 430 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 SLC26A6Q9BXS9 759 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 PSTPIP2Q9H939 334 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 XPNPEP3Q9NQH7 507 aa22.46■■□□□ 1.19
SHKBP1-221ENST00000599833 DNM1LO00429 736 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 GJA9P57773 515 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 MRPS9P82933 396 aaKnown RBP22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 MLLT1Q03111 559 aaPredicted RBP22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 PDE4DQ08499 809 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 ARHGEF16Q5VV41 709 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 IQSEC1Q6DN90 963 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 CCDC62Q6P9F0 684 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 FCHSD1Q86WN1 690 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 GTF3C6Q969F1 213 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 RIC8AQ9NPQ8 531 aa22.45■■□□□ 1.18
SHKBP1-221ENST00000599833 RANBP2P49792 3224 aaKnown RBP22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 CST5P28325 142 aaPredicted RBP22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 NAPAP54920 295 aa22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 TNFAIP2Q03169 654 aa22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 NECAB1Q8N987 351 aa22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 AIFM3Q96NN9 605 aa22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 ZMYND12Q9H0C1 365 aa22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 SLKQ9H2G2 1235 aaPredicted RBP22.44■■□□□ 1.18
SHKBP1-221ENST00000599833 ESYT2A0FGR8 921 aa22.43■■□□□ 1.18
SHKBP1-221ENST00000599833 NPY5RQ15761 445 aa22.43■■□□□ 1.18
SHKBP1-221ENST00000599833 DUSP28Q4G0W2 176 aa22.43■■□□□ 1.18
SHKBP1-221ENST00000599833 NOL8Q76FK4 1167 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-221ENST00000599833 RBM27Q9P2N5 1060 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-221ENST00000599833 MYH7BA7E2Y1 1941 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 SMCO2A6NFE2 343 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 EIF3JO75822 258 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 CD2BP2O95400 341 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 FDPSP14324 419 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 STXBP2Q15833 593 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 NECAB2Q7Z6G3 386 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 TEX2Q8IWB9 1127 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 SMARCC2Q8TAQ2 1214 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 ZFP91Q96JP5 570 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 WDR11Q9BZH6 1224 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 C11orf49Q9H6J7 331 aa22.42■■□□□ 1.18
SHKBP1-221ENST00000599833 CEP290O15078 2479 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 STK36Q9NRP7 1315 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 SEMA3FQ13275 785 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 TLK2Q86UE8 772 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms