RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TRAF1Q13077 416 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 CCDC144BQ3MJ40 725 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 UBE2Q1Q7Z7E8 422 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 DIS3LQ8TF46 1054 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 AIFM3Q96NN9 605 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 PSTPIP2Q9H939 334 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 PXMP2Q9NR77 195 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 BARHL2Q9NY43 387 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 ADCYAP1R1P41586 468 aa16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 GJC2Q5T442 439 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 SAMD3Q8N6K7 520 aa16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 NSUN6Q8TEA1 469 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 PDCD2LQ9BRP1 358 aa16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 RNF26Q9BY78 433 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 MAP3K20Q9NYL2 800 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-217ENST00000598558 PIK3CDO00329 1044 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 RGS20O76081 388 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 NR3C2P08235 984 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 FDPSP14324 419 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 SMPD1P17405 629 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 NAPAP54920 295 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 SSRP1Q08945 709 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 ARHGEF16Q5VV41 709 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 GTF3C6Q969F1 213 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 TMEM260Q9NX78 707 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 FAM184BQ9ULE4 1060 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 LIMCH1Q9UPQ0 1083 aa16.36■□□□□ 0.21
SHKBP1-217ENST00000598558 PLXNA1Q9UIW2 1896 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 LOC102724159A0A0B4J2E5 919 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 RBM47A0AV96 593 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 MYADML2A6NDP7 307 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 SMCO2A6NFE2 343 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 CTAGE5O15320 804 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 ARIH2O95376 493 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 PGK1P00558 417 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 AKR1A1P14550 325 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 PDE4DQ08499 809 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 PGM5Q15124 567 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 PWP2Q15269 919 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 RABEP1Q15276 862 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 VSIG10LQ86VR7 867 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 PGBD1Q96JS3 809 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 UPF2Q9HAU5 1272 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 VTA1Q9NP79 307 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 RIC8AQ9NPQ8 531 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 GJB4Q9NTQ9 266 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 VPS54Q9P1Q0 977 aa16.35■□□□□ 0.21
SHKBP1-217ENST00000598558 CPLX1O14810 134 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 JAK2O60674 1132 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 CLK2P49760 499 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 MRPS9P82933 396 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 NSUN7Q8NE18 718 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 SMARCC2Q8TAQ2 1214 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 COPS5Q92905 334 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 PAWRQ96IZ0 340 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 IWS1Q96ST2 819 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 GNEQ9Y223 722 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 FRMPD4Q14CM0 1322 aa16.34■□□□□ 0.21
SHKBP1-217ENST00000598558 KIAA0100Q14667 2235 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 hCG_1984214I3L0E3 225 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 MSCO60682 206 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 ADAMTS4O75173 837 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 MYCLP12524 364 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 AKAP17AQ02040 695 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 TNFAIP2Q03169 654 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 LRRC41Q15345 812 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 NPY5RQ15761 445 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 STXBP2Q15833 593 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 IQSEC1Q6DN90 963 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 PPP1R18Q6NYC8 613 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 CCDC62Q6P9F0 684 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 ZNF713Q8N859 430 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 WDR11Q9BZH6 1224 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 ZMYND12Q9H0C1 365 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 XPNPEP3Q9NQH7 507 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 PCDHA6Q9UN73 950 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 PCDHA8Q9Y5H6 950 aa16.33■□□□□ 0.2
SHKBP1-217ENST00000598558 EDIL3O43854 480 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 DUSP11O75319 330 aaKnown RBP16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 FARP2O94887 1054 aaPredicted RBP16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 DEXIO95424 95 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 RARBP10826 455 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 COL6A1P12109 1028 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 ADCY7P51828 1080 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 CCSAPQ6IQ19 270 aaPredicted RBP16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 SEPT14Q6ZU15 432 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 CCDC83Q8IWF9 413 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 KLHDC9Q8NEP7 349 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 RASGRP4Q8TDF6 673 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 CUL5Q93034 780 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 BCAS3Q9H6U6 928 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 RTEL1Q9NZ71 1219 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 RBM27Q9P2N5 1060 aaKnown RBP16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 SYNRGQ9UMZ2 1314 aa16.32■□□□□ 0.2
SHKBP1-217ENST00000598558 ESYT2A0FGR8 921 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 DYNC1LI2O43237 492 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 EIF3JO75822 258 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 MRPL12P52815 198 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 SP2Q02086 613 aa16.31■□□□□ 0.2
SHKBP1-217ENST00000598558 LY6KQ17RY6 165 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms