RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PTPDC1A2A3K4 754 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 PATL2C9JE40 543 aaKnown RBP11.99□□□□□ -0.49
TRIM28-210ENST00000597618 EFCAB14O75071 495 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 GJB5O95377 273 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 SELPP16109 830 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 KCNA5P22460 613 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 MRE11P49959 708 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 ERVK-21P61565 698 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 PDE4DQ08499 809 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 PUS10Q3MIT2 529 aaKnown RBP11.99□□□□□ -0.49
TRIM28-210ENST00000597618 CNKSR3Q6P9H4 555 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 IFNL3Q8IZI9 196 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 RAD9AQ99638 391 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 KCNH6Q9H252 994 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 RANBP17Q9H2T7 1088 aaKnown RBP11.99□□□□□ -0.49
TRIM28-210ENST00000597618 SUGCTQ9HAC7 445 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 ZBTB40Q9NUA8 1239 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 MTUS1Q9ULD2 1270 aa11.99□□□□□ -0.49
TRIM28-210ENST00000597618 LCTP09848 1927 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 ABHD14A-ACY1A0A1B0GW23 586 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 LINC01553A4QN01 128 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 M0R2C6 588 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 NFIBO00712 420 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 DEFB103AP81534 67 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 PPARAQ07869 468 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 CCDC96Q2M329 555 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 PTCRAQ6ISU1 281 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-210ENST00000597618 SLC30A10Q6XR72 485 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 LRRC8DQ7L1W4 858 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 TMCO2Q7Z6W1 182 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-210ENST00000597618 SESTD1Q86VW0 696 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.98□□□□□ -0.49
TRIM28-210ENST00000597618 PPP1R13LQ8WUF5 828 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 DCAF4Q8WV16 495 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 GPATCH3Q96I76 525 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 CRBNQ96SW2 442 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 NAPBQ9H115 298 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 CHMP4BQ9H444 224 aaKnown RBP11.98□□□□□ -0.49
TRIM28-210ENST00000597618 PNMA2Q9UL42 364 aa11.98□□□□□ -0.49
TRIM28-210ENST00000597618 TSPY2A6NKD2 308 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 B4DLN1 442 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 CXCL10P02778 98 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 TXNP10599 105 aaKnown RBP11.97□□□□□ -0.49
TRIM28-210ENST00000597618 IL9P15248 144 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 EDNRBP24530 442 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 CALML3P27482 149 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 MRPL12P52815 198 aaKnown RBP11.97□□□□□ -0.49
TRIM28-210ENST00000597618 CHMP4BP1P59074 171 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 NHLH1Q02575 133 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 RBL2Q08999 1139 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 RNF207Q6ZRF8 634 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 RASGRP2Q7LDG7 609 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 DNERQ8NFT8 737 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 TET1Q8NFU7 2136 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 MTMR7Q9Y216 660 aa11.97□□□□□ -0.49
TRIM28-210ENST00000597618 GRXCR2A6NFK2 248 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 DCXO43602 365 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 GPNMBQ14956 572 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 SYDE2Q5VT97 1194 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 GDF6Q6KF10 455 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-210ENST00000597618 BTNL9Q6UXG8 535 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 FBXO22Q8NEZ5 403 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 COPS5Q92905 334 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 CTAGE1Q96RT6 745 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 IL17RBQ9NRM6 502 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 CTNNA3Q9UI47 895 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 FAM50BQ9Y247 325 aa11.96□□□□□ -0.49
TRIM28-210ENST00000597618 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.96□□□□□ -0.49
TRIM28-210ENST00000597618 SMARCA5O60264 1052 aaPredicted RBP11.95□□□□□ -0.5
TRIM28-210ENST00000597618 NMT2O60551 498 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 NBNO60934 754 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 MMP3P08254 477 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 CKBP12277 381 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 SLC16A2P36021 539 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 NOVP48745 357 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 RPS6P62753 249 aaKnown RBP11.95□□□□□ -0.5
TRIM28-210ENST00000597618 IKBKEQ14164 716 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 PTPROQ16827 1216 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 TIGD5Q53EQ6 642 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 NEK9Q8TD19 979 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 CLEC4DQ8WXI8 215 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 DHX38Q92620 1227 aaKnown RBP11.95□□□□□ -0.5
TRIM28-210ENST00000597618 MRPL38Q96DV4 380 aaKnown RBP11.95□□□□□ -0.5
TRIM28-210ENST00000597618 FBXL18Q96ME1 805 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 INSL6Q9Y581 213 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 TRIOO75962 3097 aa11.95□□□□□ -0.5
TRIM28-210ENST00000597618 PTPRSQ13332 1948 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 RANBP6O60518 1105 aaKnown RBP11.94□□□□□ -0.5
TRIM28-210ENST00000597618 ARIH2O95376 493 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 TTBK2Q6IQ55 1244 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 FAM117BQ6P1L5 589 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 C7orf31Q8N865 590 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 AFG1LQ8WV93 481 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 PRKAG3Q9UGI9 489 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 GTF2IRD1Q9UHL9 959 aa11.94□□□□□ -0.5
TRIM28-210ENST00000597618 WDR19Q8NEZ3 1342 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 POTEB3A0JP26 581 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 H3BQ06 376 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-210ENST00000597618 GH1P01241 217 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 AMHP03971 560 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms