RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ARHGAP4P98171 946 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 ARL6IP4Q66PJ3 421 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 SLC30A10Q6XR72 485 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 RNF207Q6ZRF8 634 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 FCHSD1Q86WN1 690 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 KRI1Q8N9T8 703 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 PAGR1Q9BTK6 254 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 MOV10L1Q9BXT6 1211 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 TMEM60Q9H2L4 133 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 DDX49Q9Y6V7 483 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 DOCK3Q8IZD9 2030 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 ADGRA2Q96PE1 1338 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 FAM237AA0A1B0GTK4 181 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 LAD1O00515 517 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 CCNT1O60563 726 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 SLC25A27O95847 323 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 PRPHP41219 470 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 GCLCP48506 637 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 PLS1Q14651 629 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 Q3C1V9 767 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 ZNF579Q8NAF0 562 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 SHCBP1Q8NEM2 672 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 FERMT2Q96AC1 680 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 EHMT1Q9H9B1 1298 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 A1CFQ9NQ94 594 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 MORF4L1Q9UBU8 362 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 FBXO40Q9UH90 709 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 ABT1Q9ULW3 272 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 PLXNA1Q9UIW2 1896 aa16.75■□□□□ 0.27
SHKBP1-211ENST00000595945 GOLGA6L4A6NEF3 574 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 IGF2BP3O00425 579 aaKnown RBP eCLIP16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 SLC37A4O43826 429 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 CMA1P23946 247 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 INHBEP58166 350 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 ERVK-9P63128 1117 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 ERVK-24P63145 666 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 GRIN1Q05586 938 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 BAATQ14032 418 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 IL17AQ16552 155 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 NSMFQ6X4W1 530 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 MTMR9Q96QG7 549 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 TAAR1Q96RJ0 339 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 PARK7Q99497 189 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 CYP39A1Q9NYL5 469 aa16.74■□□□□ 0.27
SHKBP1-211ENST00000595945 LRRC37A2A6NM11 1700 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 NEMFO60524 1076 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 OR52Z1P0C646 297 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 LIG1P18858 919 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 Q4G0T1 1027 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 RESP18Q5W5W9 173 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 SHC4Q6S5L8 630 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 CCAR1Q8IX12 1150 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 MRPS27Q92552 414 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 CLIC6Q96NY7 704 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 R3HDMLQ9H3Y0 253 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 GOLPH3LQ9H4A5 285 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 MCM3APO60318 1980 aa16.73■□□□□ 0.27
SHKBP1-211ENST00000595945 PFASO15067 1338 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 RASSF10A6NK89 507 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 ERCC3P19447 782 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 FSIP1Q8NA03 581 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 ENGASEQ8NFI3 743 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 SMCR8Q8TEV9 937 aaPredicted RBP16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 LENG9Q96B70 501 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 MROH8Q9H579 483 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 DDX25Q9UHL0 483 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 HPSEQ9Y251 543 aa16.72■□□□□ 0.27
SHKBP1-211ENST00000595945 ZNF236Q9UL36 1845 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 IGLV3-22A0A075B6J6 115 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 FAM86B1E9PN63 330 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 FAM86B2P0C5J1 330 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 TM4SF4P48230 202 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 APLP1P51693 650 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 CALCRLQ16602 461 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 NCAPG2Q86XI2 1143 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 IFNL1Q8IU54 200 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 GPRC5AQ8NFJ5 357 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 IL31RAQ8NI17 732 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 HAS1Q92839 578 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 PDCD2LQ9BRP1 358 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 CSRNP2Q9H175 543 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 KCNMB3Q9NPA1 279 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 PXMP2Q9NR77 195 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 CREBZFQ9NS37 354 aa16.71■□□□□ 0.27
SHKBP1-211ENST00000595945 WDR81Q562E7 1941 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 MGAMO43451 1857 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 TBX3O15119 743 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 LONP1P36776 959 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 UBXN2AP68543 259 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 FAM160A1Q05DH4 1040 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 SREBF2Q12772 1141 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 SNW1Q13573 536 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 PGM5Q15124 567 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 FAM110CQ1W6H9 321 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 PCNX4Q63HM2 1172 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 XRRA1Q6P2D8 792 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 ETNPPLQ8TBG4 499 aa16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 PURBQ96QR8 312 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-211ENST00000595945 ZIC5Q96T25 663 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms