RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PIK3CDO00329 1044 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 CPLX1O14810 134 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 PRPF3O43395 683 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 IFNAR1P17181 557 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 ADCYAP1R1P41586 468 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 LRRC41Q15345 812 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 GJC2Q5T442 439 aaPredicted RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 CPLX2Q6PUV4 134 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 NOL8Q76FK4 1167 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 FCHSD1Q86WN1 690 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 TEX2Q8IWB9 1127 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 DIS3LQ8TF46 1054 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 LARP6Q9BRS8 491 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 RNF26Q9BY78 433 aaPredicted RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 C22orf23Q9BZE7 217 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 PDGFCQ9NRA1 345 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 Q9Y3F1 56 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 DDX49Q9Y6V7 483 aaKnown RBP17.3■□□□□ 0.36
UPF1-202ENST00000594243 BRCA2P51587 3418 aa17.3■□□□□ 0.36
UPF1-202ENST00000594243 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 RBM47A0AV96 593 aaKnown RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 MEIS2O14770 477 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 EIF3JO75822 258 aaKnown RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 PGK1P00558 417 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 NR3C2P08235 984 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 EIF2AK2P19525 551 aaKnown RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 AK2P54819 239 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 NAPAP54920 295 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 STK3Q13188 491 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 NTRK3Q16288 839 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 PFKFB3Q16875 520 aaPredicted RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 WWC2Q6AWC2 1192 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 PPP1R18Q6NYC8 613 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 GPKOWQ92917 476 aaPredicted RBP eCLIP17.29■□□□□ 0.36
UPF1-202ENST00000594243 PDCD2LQ9BRP1 358 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 WDR11Q9BZH6 1224 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 SLKQ9H2G2 1235 aaPredicted RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 NCOA5Q9HCD5 579 aaKnown RBP17.29■□□□□ 0.36
UPF1-202ENST00000594243 BARHL2Q9NY43 387 aa17.29■□□□□ 0.36
UPF1-202ENST00000594243 LCTP09848 1927 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 ADAMTS4O75173 837 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 COL6A1P12109 1028 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 SCG2P13521 617 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 SMPD1P17405 629 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 RBM25P49756 843 aaKnown RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 GJA9P57773 515 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 PGM5Q15124 567 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 DUSP28Q4G0W2 176 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 USP17L6PQ6QN14 398 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 TRIM22Q8IYM9 498 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 SCFD2Q8WU76 684 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 CCDC12Q8WUD4 166 aaPredicted RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 DPF3Q92784 378 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 PHKBQ93100 1093 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 LENG1Q96BZ8 264 aaPredicted RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 TSEN34Q9BSV6 310 aaKnown RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 SENP6Q9GZR1 1112 aaPredicted RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 AP5M1Q9H0R1 490 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 GLT8D2Q9H1C3 349 aa17.28■□□□□ 0.36
UPF1-202ENST00000594243 GNEQ9Y223 722 aaKnown RBP17.28■□□□□ 0.36
UPF1-202ENST00000594243 SYNRGQ9UMZ2 1314 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 SMCO2A6NFE2 343 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 STXBP3O00186 592 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 NKRFO15226 690 aaKnown RBP eCLIP17.27■□□□□ 0.36
UPF1-202ENST00000594243 ADCY6O43306 1168 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 C6orf222P0C671 652 aaPredicted RBP17.27■□□□□ 0.36
UPF1-202ENST00000594243 MYCLP12524 364 aaPredicted RBP17.27■□□□□ 0.36
UPF1-202ENST00000594243 CCND2P30279 289 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 NKX3-2P78367 333 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 SSRP1Q08945 709 aaKnown RBP17.27■□□□□ 0.36
UPF1-202ENST00000594243 TTLL4Q14679 1199 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 VSIG10LQ86VR7 867 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 PCSK9Q8NBP7 692 aaKnown RBP17.27■□□□□ 0.36
UPF1-202ENST00000594243 KLHDC9Q8NEP7 349 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 SLC26A6Q9BXS9 759 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 UPF3AQ9H1J1 476 aaKnown RBP17.27■□□□□ 0.36
UPF1-202ENST00000594243 RIC8AQ9NPQ8 531 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 TPCN1Q9ULQ1 816 aa17.27■□□□□ 0.36
UPF1-202ENST00000594243 SPDYE3A6NKU9 549 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 DYNC1LI2O43237 492 aaPredicted RBP17.26■□□□□ 0.35
UPF1-202ENST00000594243 PFKFB2O60825 505 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 STAM2O75886 525 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 CDKL5O76039 1030 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 TXNP10599 105 aaKnown RBP17.26■□□□□ 0.35
UPF1-202ENST00000594243 CST5P28325 142 aaPredicted RBP17.26■□□□□ 0.35
UPF1-202ENST00000594243 SEPT14Q6ZU15 432 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 TLK2Q86UE8 772 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 BAZ2BQ9UIF8 2168 aaKnown RBP17.26■□□□□ 0.35
UPF1-202ENST00000594243 FRMPD3Q5JV73 1810 aa17.26■□□□□ 0.35
UPF1-202ENST00000594243 MOXD2PA6NHM9 499 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 ZEB2O60315 1214 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 SCRN1Q12765 414 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 KCNA10Q16322 511 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 PKN1Q16512 942 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 GNASQ5JWF2 1037 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 XRRA1Q6P2D8 792 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 KCNV1Q6PIU1 500 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 IL27Q8NEV9 243 aa17.25■□□□□ 0.35
UPF1-202ENST00000594243 EHMT1Q9H9B1 1298 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms