RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 FOXB2Q5VYV0 432 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 ZNF605Q86T29 641 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 ZSWIM2Q8NEG5 633 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 DHRS4Q9BTZ2 278 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 PHF20Q9BVI0 1012 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 EPB41L4BQ9H329 900 aa7.24□□□□□ -1.25
SMAD4-216ENST00000593223 DCP1AQ9NPI6 582 aaPredicted RBP7.24□□□□□ -1.25
SMAD4-216ENST00000593223 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.24□□□□□ -1.25
SMAD4-216ENST00000593223 LCP1P13796 627 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 GTF2A2P52657 109 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 RCBTB1Q8NDN9 531 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 DCAF4Q8WV16 495 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 KRTAP4-7Q9BYR0 210 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 DBR1Q9UK59 544 aaKnown RBP7.23□□□□□ -1.25
SMAD4-216ENST00000593223 PTCH2Q9Y6C5 1203 aa7.23□□□□□ -1.25
SMAD4-216ENST00000593223 ARNTLO00327 626 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 PPP1R11O60927 126 aaPredicted RBP7.22□□□□□ -1.25
SMAD4-216ENST00000593223 BCL6P41182 706 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 ERVFRD-1P60508 538 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 TMEM132EQ6IEE7 984 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 CEP68Q76N32 757 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 TEX2Q8IWB9 1127 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 DPF3Q92784 378 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 TRMT2BQ96GJ1 504 aaKnown RBP7.22□□□□□ -1.25
SMAD4-216ENST00000593223 EXOC2Q96KP1 924 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 TNFRSF12AQ9NP84 129 aa7.22□□□□□ -1.25
SMAD4-216ENST00000593223 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.22□□□□□ -1.25
SMAD4-216ENST00000593223 MRPS23Q9Y3D9 190 aaKnown RBP7.22□□□□□ -1.25
SMAD4-216ENST00000593223 C22orf46C9J442 243 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 TMEM62Q0P6H9 643 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 LSAMPQ13449 338 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 TESK1Q15569 626 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 NTRK3Q16288 839 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 OLFML2BQ68BL8 750 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 KCNT2Q6UVM3 1135 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 SH3TC2Q8TF17 1288 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 TMEM169Q96HH4 297 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 MTA3Q9BTC8 594 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 GPR27Q9NS67 375 aa7.21□□□□□ -1.26
SMAD4-216ENST00000593223 SHROOM4Q9ULL8 1493 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 ABLIM1O14639 778 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 CYBBP04839 570 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 DBHP09172 617 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 NR1I3Q14994 352 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 PAQR3Q6TCH7 311 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 RSPO2Q6UXX9 243 aaPredicted RBP7.2□□□□□ -1.26
SMAD4-216ENST00000593223 FBXO15Q8NCQ5 510 aaPredicted RBP7.2□□□□□ -1.26
SMAD4-216ENST00000593223 ZNF552Q9H707 407 aaPredicted RBP7.2□□□□□ -1.26
SMAD4-216ENST00000593223 KCNK12Q9HB15 430 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 CLDND1Q9NY35 253 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 COA3Q9Y2R0 106 aaPredicted RBP7.2□□□□□ -1.26
SMAD4-216ENST00000593223 NPFFR2Q9Y5X5 522 aa7.2□□□□□ -1.26
SMAD4-216ENST00000593223 CCDC163A0A0D9SF12 145 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 ZC3H12DA2A288 527 aaKnown RBP7.19□□□□□ -1.26
SMAD4-216ENST00000593223 F8W031 263 aaPredicted RBP7.19□□□□□ -1.26
SMAD4-216ENST00000593223 IGSF3O75054 1194 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 FARP2O94887 1054 aaPredicted RBP7.19□□□□□ -1.26
SMAD4-216ENST00000593223 NTRK1P04629 796 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 APPP05067 770 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 FPR2P25090 351 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 WWC2Q6AWC2 1192 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 STYK1Q6J9G0 422 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 RPTNQ6XPR3 784 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 IFNL3Q8IZI9 196 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 JMYQ8N9B5 988 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 PTPRN2Q92932 1015 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 ZFYVE21Q9BQ24 234 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 RXFP1Q9HBX9 757 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 SIRT5Q9NXA8 310 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 FBLN5Q9UBX5 448 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 NUDT5Q9UKK9 219 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 TRAF6Q9Y4K3 522 aa7.19□□□□□ -1.26
SMAD4-216ENST00000593223 SRGAP3O43295 1099 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 MSCO60682 206 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 GLI4P10075 376 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 GPR85P60893 370 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 GABREP78334 506 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 SRSF3P84103 164 aaKnown RBP7.18□□□□□ -1.26
SMAD4-216ENST00000593223 LCE1DQ5T752 114 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 ZC3H14Q6PJT7 736 aaKnown RBP7.18□□□□□ -1.26
SMAD4-216ENST00000593223 MAMDC2Q7Z304 686 aaPredicted RBP7.18□□□□□ -1.26
SMAD4-216ENST00000593223 NOP9Q86U38 636 aaKnown RBP7.18□□□□□ -1.26
SMAD4-216ENST00000593223 MTDHQ86UE4 582 aaKnown RBP7.18□□□□□ -1.26
SMAD4-216ENST00000593223 PLEKHO2Q8TD55 490 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 SLC38A3Q99624 504 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 KLHL14Q9P2G3 628 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 FBXL7Q9UJT9 491 aa7.18□□□□□ -1.26
SMAD4-216ENST00000593223 RIMBP3CA6NJZ7 1639 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 RIMBP3BA6NNM3 1639 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 RIMBP3Q9UFD9 1639 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 H7BY64 318 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 AQP7O14520 342 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 OGFOD2Q6N063 350 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 LBX2Q6XYB7 198 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 TMC6Q7Z403 805 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 NLRP10Q86W26 655 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 NETO2Q8NC67 525 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 KCNN1Q92952 543 aa7.17□□□□□ -1.26
SMAD4-216ENST00000593223 KISS1RQ969F8 398 aaPredicted RBP7.17□□□□□ -1.26
SMAD4-216ENST00000593223 RNPC3Q96LT9 517 aaKnown RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms