RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CEP170P1Q96L14 293 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 ALDH8A1Q9H2A2 487 aaPredicted RBP10.92□□□□□ -0.66
LIG3-216ENST00000593099 CLIC4Q9Y696 253 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 ADM5C9JUS6 153 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 ERLIN2O94905 339 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 TBC1D8BQ0IIM8 1120 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 NELFCDQ8IXH7 590 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 RNF169Q8NCN4 708 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 NEK11Q8NG66 645 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 MAGEF1Q9HAY2 307 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 POLR3EQ9NVU0 708 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 CTNND2Q9UQB3 1225 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 FAM208AQ9UK61 1670 aaKnown RBP10.92□□□□□ -0.66
LIG3-216ENST00000593099 CDC27P30260 824 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 ARHGAP4P98171 946 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 PAK1Q13153 545 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 SPOUT1Q5T280 376 aaKnown RBP10.92□□□□□ -0.66
LIG3-216ENST00000593099 SMC1BQ8NDV3 1235 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 GIMAP7Q8NHV1 300 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 IGDCC4Q8TDY8 1250 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 BLZF1Q9H2G9 400 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 CUEDC2Q9H467 287 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 TBC1D22BQ9NU19 505 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 CGNQ9P2M7 1197 aaKnown RBP10.92□□□□□ -0.66
LIG3-216ENST00000593099 PALM3A6NDB9 673 aaPredicted RBP10.91□□□□□ -0.66
LIG3-216ENST00000593099 PDHBP11177 359 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 LIG4P49917 911 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 BACE1P56817 501 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 SYMPKQ92797 1274 aaKnown RBP10.91□□□□□ -0.66
LIG3-216ENST00000593099 PCDHA7Q9UN72 937 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 KCNH4Q9UQ05 1017 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 AKT3Q9Y243 479 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 PPP6R2O75170 966 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 JAK3P52333 1124 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 CNPY4Q8N129 248 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 CLIC6Q96NY7 704 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 CD2BP2O95400 341 aaKnown RBP10.91□□□□□ -0.66
LIG3-216ENST00000593099 DPH6Q7L8W6 267 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 FMNL3Q8IVF7 1028 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 CDCA5Q96FF9 252 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 CEP83Q9Y592 693 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 K7ENM7 598 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 MYL3P08590 195 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 GOLGA5Q8TBA6 731 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 ZC3H15Q8WU90 426 aaKnown RBP10.91□□□□□ -0.66
LIG3-216ENST00000593099 SHPRHQ149N8 1683 aa10.91□□□□□ -0.66
LIG3-216ENST00000593099 GLTPD2A6NH11 291 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 WTIPA6NIX2 430 aaPredicted RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 CXCL11O14625 94 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 GTPBP6O43824 516 aaPredicted RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 LPXNO60711 386 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ADCY5O95622 1261 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 GCLCP48506 637 aaPredicted RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 KRT76Q01546 638 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 UBXN1Q04323 297 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 KARSQ15046 597 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 MYOCDQ8IZQ8 938 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 SRBD1Q8N5C6 995 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 MSANTD4Q8NCY6 345 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 SLC17A8Q8NDX2 589 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ACER1Q8TDN7 264 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ATG4CQ96DT6 458 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 PDGFDQ9GZP0 370 aaPredicted RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 BAATQ14032 418 aaPredicted RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 FAM26FQ5R3K3 315 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 CHADLQ6NUI6 762 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 CHST13Q8NET6 341 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 LARP4BQ92615 738 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 FAM167AQ96KS9 214 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 FAM20AQ96MK3 541 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 CSRNP2Q9H175 543 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 PANK4Q9NVE7 773 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ALDH1A1P00352 501 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 MTERF2Q49AM1 385 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ODR4Q5SWX8 454 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ARL6IP4Q66PJ3 421 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 KCNV1Q6PIU1 500 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 ADGRA1Q86SQ6 560 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 IPO4Q8TEX9 1081 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 MAP3K14Q99558 947 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 NOC4LQ9BVI4 516 aaKnown RBP10.9□□□□□ -0.66
LIG3-216ENST00000593099 ZSWIM4Q9H7M6 989 aa10.9□□□□□ -0.66
LIG3-216ENST00000593099 A0A1W2PQ27 194 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 A0A1W2PQ64 194 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 A0A1W2PQD8 194 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 MANSC4A6NHS7 340 aaPredicted RBP10.9□□□□□ -0.67
LIG3-216ENST00000593099 WDR64B1ANS9 1081 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 NR1I2O75469 434 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 GNAT1P11488 350 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 ZFP91Q96JP5 570 aaPredicted RBP10.9□□□□□ -0.67
LIG3-216ENST00000593099 STK17AQ9UEE5 414 aa10.9□□□□□ -0.67
LIG3-216ENST00000593099 SETD1AO15047 1707 aaKnown RBP10.89□□□□□ -0.67
LIG3-216ENST00000593099 Q3C1V9 767 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 OPTNQ96CV9 577 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 RIC8AQ9NPQ8 531 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 GAKO14976 1311 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 INO80B-WBP1J3KQ70 363 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 CYP2B6P20813 491 aa10.89□□□□□ -0.67
LIG3-216ENST00000593099 YARSP54577 528 aaKnown RBP10.89□□□□□ -0.67
LIG3-216ENST00000593099 CERS5Q8N5B7 392 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms