RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ESR2Q92731 530 aa13.78□□□□□ -0.2
CLIP3-204ENST00000590559 COPS5Q92905 334 aa13.78□□□□□ -0.2
CLIP3-204ENST00000590559 CPVLQ9H3G5 476 aa13.78□□□□□ -0.2
CLIP3-204ENST00000590559 RNF41Q9H4P4 317 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-204ENST00000590559 PCDHA11Q9Y5I1 949 aa13.78□□□□□ -0.2
CLIP3-204ENST00000590559 TRIM6-TRIM34B2RNG4 842 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 PITPNM1O00562 1244 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 KPNA6O60684 536 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 NCOR1O75376 2440 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 MYL3P08590 195 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 GOLGA8HP0CJ92 632 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 RABGGTBP53611 331 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 MFAP1P55081 439 aaKnown RBP13.77□□□□□ -0.21
CLIP3-204ENST00000590559 NUCB1Q02818 461 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 PTPN11Q06124 597 aaPredicted RBP13.77□□□□□ -0.21
CLIP3-204ENST00000590559 PDE4DQ08499 809 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 PPP2R5BQ15173 497 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 PNMA1Q8ND90 353 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 ATXN2LQ8WWM7 1075 aaKnown RBP13.77□□□□□ -0.21
CLIP3-204ENST00000590559 CTAGE1Q96RT6 745 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 ZKSCAN3Q9BRR0 538 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 SLC28A3Q9HAS3 691 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 COL20A1Q9P218 1284 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 SLC4A7Q9Y6M7 1214 aa13.77□□□□□ -0.21
CLIP3-204ENST00000590559 ZNF213O14771 459 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 IGHDP01880 384 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 MYOGP15173 224 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 CHD1LQ86WJ1 897 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 ADGRF4Q8IZF3 695 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 ENAHQ8N8S7 591 aaPredicted RBP13.76□□□□□ -0.21
CLIP3-204ENST00000590559 RILPL2Q969X0 211 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 UBA5Q9GZZ9 404 aa13.76□□□□□ -0.21
CLIP3-204ENST00000590559 ABCB11O95342 1321 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 RAD50Q92878 1312 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 KDM4AO75164 1064 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 IQCF3P0C7M6 154 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 TXNP10599 105 aaKnown RBP13.75□□□□□ -0.21
CLIP3-204ENST00000590559 POU3F3P20264 500 aaPredicted RBP13.75□□□□□ -0.21
CLIP3-204ENST00000590559 RFC2P35250 354 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 GHRHRQ02643 423 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 ARHGAP1Q07960 439 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 GPNMBQ14956 572 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 CDC37Q16543 378 aaPredicted RBP13.75□□□□□ -0.21
CLIP3-204ENST00000590559 USH1GQ495M9 461 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 CCDC178Q5BJE1 867 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 SESTD1Q86VW0 696 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 SYTL5Q8TDW5 730 aaPredicted RBP13.75□□□□□ -0.21
CLIP3-204ENST00000590559 PPP1R13LQ8WUF5 828 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 KAT2BQ92831 832 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 TAAR1Q96RJ0 339 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 MPHOSPH6Q99547 160 aaKnown RBP13.75□□□□□ -0.21
CLIP3-204ENST00000590559 DSCC1Q9BVC3 393 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 ZSWIM5Q9P217 1185 aa13.75□□□□□ -0.21
CLIP3-204ENST00000590559 B4DLN1 442 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 OPLAHO14841 1288 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 ATP2A2P16615 1042 aaKnown RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 MRPL12P52815 198 aaKnown RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 ASPRV1Q53RT3 343 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 BRDTQ58F21 947 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 CWC27Q6UX04 472 aaKnown RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 IQCA1Q86XH1 822 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 MTMR8Q96EF0 704 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 ASB2Q96Q27 587 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 IWS1Q96ST2 819 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 ZSCAN10Q96SZ4 725 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 IL25Q9H293 177 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 RWDD1Q9H446 243 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 JMJD4Q9H9V9 463 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 GPHNQ9NQX3 736 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-204ENST00000590559 THEGQ9P2T0 379 aa13.74□□□□□ -0.21
CLIP3-204ENST00000590559 B4E1Z4 1266 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 MMP3P08254 477 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 RBL2Q08999 1139 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 LY6KQ17RY6 165 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 QRICH1Q2TAL8 776 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 PPP2R2DQ66LE6 453 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 B4GALNT3Q6L9W6 998 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 DEFB128Q7Z7B8 93 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 PHOSPHO2Q8TCD6 241 aa13.73□□□□□ -0.21
CLIP3-204ENST00000590559 NSUN6Q8TEA1 469 aaKnown RBP13.73□□□□□ -0.21
CLIP3-204ENST00000590559 EMID1Q96A84 441 aaPredicted RBP13.73□□□□□ -0.21
CLIP3-204ENST00000590559 PRRC2BQ5JSZ5 2229 aaKnown RBP13.73□□□□□ -0.21
CLIP3-204ENST00000590559 TCF20Q9UGU0 1960 aaKnown RBP13.72□□□□□ -0.21
CLIP3-204ENST00000590559 COL4A4P53420 1690 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-204ENST00000590559 ZBBXA8MT70 800 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 TNFRSF10AO00220 468 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 ARHGEF15O94989 841 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 GH1P01241 217 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 HSD17B4P51659 736 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 SEC23AQ15436 765 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 CCDC85BQ15834 202 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-204ENST00000590559 FAM47CQ5HY64 1035 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 GDF6Q6KF10 455 aaPredicted RBP13.72□□□□□ -0.21
CLIP3-204ENST00000590559 AFG1LQ8WV93 481 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 PPM1EQ8WY54 764 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 DHX38Q92620 1227 aaKnown RBP13.72□□□□□ -0.21
CLIP3-204ENST00000590559 SLC9A7Q96T83 725 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 RMDN3Q96TC7 470 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 KAT14Q9H8E8 782 aa13.72□□□□□ -0.21
CLIP3-204ENST00000590559 DDX41Q9UJV9 622 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms