RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 TUBB4BP68371 445 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 EVX2Q03828 476 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 GABPAQ06546 454 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 TRAF1Q13077 416 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 GRIK5Q16478 980 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 SLC4A8Q2Y0W8 1093 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 TRMT44Q8IYL2 757 aaKnown RBP11.91□□□□□ -0.5
ZNF540-208ENST00000589857 IGSF22Q8N9C0 903 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 NELFBQ8WX92 580 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 DHTKD1Q96HY7 919 aaPredicted RBP11.91□□□□□ -0.5
ZNF540-208ENST00000589857 CDK5RAP3Q96JB5 506 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 CCDC94Q9BW85 323 aaPredicted RBP11.91□□□□□ -0.5
ZNF540-208ENST00000589857 USP40Q9NVE5 1235 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 ADD3Q9UEY8 706 aaKnown RBP11.91□□□□□ -0.5
ZNF540-208ENST00000589857 STK24Q9Y6E0 443 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 BAZ2AQ9UIF9 1905 aaKnown RBP11.9□□□□□ -0.5
ZNF540-208ENST00000589857 PNMA6FA0A0J9YX94 578 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 USP27XA6NNY8 438 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 CYTH3O43739 400 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 CCNT1O60563 726 aaKnown RBP11.9□□□□□ -0.5
ZNF540-208ENST00000589857 RHOBTB3O94955 611 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 TBC1D8O95759 1140 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 CCDC175P0C221 793 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 PDHBP11177 359 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 TSR1Q2NL82 804 aaKnown RBP11.9□□□□□ -0.5
ZNF540-208ENST00000589857 LETM2Q2VYF4 491 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 COBLL1Q53SF7 1204 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 DDX60LQ5H9U9 1706 aaKnown RBP11.9□□□□□ -0.5
ZNF540-208ENST00000589857 CNNM4Q6P4Q7 775 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 DLK2Q6UY11 383 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 FEZ1Q99689 392 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 CFHR5Q9BXR6 569 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 L2HGDHQ9H9P8 463 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 SAMSN1Q9NSI8 373 aaKnown RBP11.9□□□□□ -0.5
ZNF540-208ENST00000589857 EXOC1Q9NV70 894 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 KBTBD4Q9NVX7 518 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 PPP2R2CQ9Y2T4 447 aa11.9□□□□□ -0.5
ZNF540-208ENST00000589857 TMEM232C9JQI7 657 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 N4BP3O15049 544 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 MFAP3LO75121 409 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 FXR2P51116 673 aaKnown RBP eCLIP11.89□□□□□ -0.51
ZNF540-208ENST00000589857 ZNF543Q08ER8 600 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 PICALMQ13492 652 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 PDIA5Q14554 519 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 SEPT2Q15019 361 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 KARSQ15046 597 aaKnown RBP11.89□□□□□ -0.51
ZNF540-208ENST00000589857 ARHGEF6Q15052 776 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 USP17L2Q6R6M4 530 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 TMTC1Q8IUR5 882 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 ADSSL1Q8N142 457 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 TC2NQ8N9U0 490 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 DCAF4Q8WV16 495 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 CUL5Q93034 780 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 PIGSQ96S52 555 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 C7orf25Q9BPX7 421 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 RIC8AQ9NPQ8 531 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 KCNQ5Q9NR82 932 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 INTS13Q9NVM9 706 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 DNAI1Q9UI46 699 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 SYNPO2Q9UMS6 1093 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 MTMR7Q9Y216 660 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 TAF1P21675 1872 aa11.89□□□□□ -0.51
ZNF540-208ENST00000589857 PVALEFA0A1B0GWK0 134 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 A0A1W2PQC6 194 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 MANSC4A6NHS7 340 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 UNCXA6NJT0 531 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 USP17L5A8MUK1 530 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 KCNJ18B7U540 433 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 WNT7AO00755 349 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 GOLGA8HP0CJ92 632 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 CD44P16070 742 aaKnown RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 CASQ1P31415 396 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 PBX1P40424 430 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 COPB1P53618 953 aaKnown RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 STX17P56962 302 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 KCNJ12Q14500 433 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 IL17AQ16552 155 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 CALCRLQ16602 461 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 TCP11X2Q5H9J9 407 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 STRIP1Q5VSL9 837 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 TYW1BQ6NUM6 668 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 FOXR2Q6PJQ5 311 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 SYT10Q6XYQ8 523 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 SV2BQ7L1I2 683 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 APOBEC3FQ8IUX4 373 aaKnown RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 GIMAP8Q8ND71 665 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 MNS1Q8NEH6 495 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 ZNF397Q8NF99 534 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 RASGRP4Q8TDF6 673 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 TBCKQ8TEA7 893 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 ZDHHC15Q96MV8 337 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 NUP58Q9BVL2 599 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 BLZF1Q9H2G9 400 aa11.88□□□□□ -0.51
ZNF540-208ENST00000589857 ARGLU1Q9NWB6 273 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-208ENST00000589857 KDM3AQ9Y4C1 1321 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 ZBTB5O15062 677 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KIF5CO60282 957 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 MARCH6O60337 910 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KIF20AO95235 890 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 FECHP22830 423 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms