RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 FBXO28Q9NVF7 368 aa13.2□□□□□ -0.3
CCDC47-206ENST00000584112 ZZEF1O43149 2961 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 IGKV6D-41A0A0C4DH26 115 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 F5H6K3 240 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 VWA5AO00534 786 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 TTLL1O95922 423 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 TSPY3P0CV98 308 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 TSPY8P0CW00 308 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 AKR1A1P14550 325 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 KLRC3Q07444 240 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 PPARAQ07869 468 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 SIGLEC14Q08ET2 396 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 SMAD2Q15796 467 aaKnown RBP13.19□□□□□ -0.3
CCDC47-206ENST00000584112 PPP4R3BQ5MIZ7 849 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 RIOX2Q8IUF8 465 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 PABPC5Q96DU9 382 aaKnown RBP13.19□□□□□ -0.3
CCDC47-206ENST00000584112 CEP95Q96GE4 821 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 AGBL1Q96MI9 1066 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 SLF1Q9BQI6 1058 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 RWDD1Q9H446 243 aaPredicted RBP13.19□□□□□ -0.3
CCDC47-206ENST00000584112 CLIP2Q9UDT6 1046 aa13.19□□□□□ -0.3
CCDC47-206ENST00000584112 OTOGLQ3ZCN5 2332 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 STXBP3O00186 592 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 PRDM1O75626 825 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 NDUFB10O96000 172 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 STAT3P40763 770 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 PRPF38AQ8NAV1 312 aaKnown RBP13.18□□□□□ -0.3
CCDC47-206ENST00000584112 GMCL1P1Q8NEA9 526 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 NEDD1Q8NHV4 660 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 PHOSPHO2Q8TCD6 241 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 MKL1Q969V6 931 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 MMP19Q99542 508 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 HELLSQ9NRZ9 838 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 CLDND1Q9NY35 253 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 MTMR4Q9NYA4 1195 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 ZNF214Q9UL59 606 aaPredicted RBP13.18□□□□□ -0.3
CCDC47-206ENST00000584112 CTDP1Q9Y5B0 961 aaPredicted RBP13.18□□□□□ -0.3
CCDC47-206ENST00000584112 FRYQ5TBA9 3013 aa13.18□□□□□ -0.3
CCDC47-206ENST00000584112 SPEGQ15772 3267 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 RBAK-RBAKDNI3L0D1 243 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 MBTPS2O43462 519 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 C6orf222P0C671 652 aaPredicted RBP13.17□□□□□ -0.3
CCDC47-206ENST00000584112 LTBRP36941 435 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 TCEAL5Q5H9L2 206 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 MCTP2Q6DN12 878 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 SMC5Q8IY18 1101 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 NUP88Q99567 741 aaPredicted RBP13.17□□□□□ -0.3
CCDC47-206ENST00000584112 TEX13BQ9BXU2 312 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 LNPKQ9C0E8 428 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 NRBP1Q9UHY1 535 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 FEM1BQ9UK73 627 aa13.17□□□□□ -0.3
CCDC47-206ENST00000584112 ZBED4O75132 1171 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 ERVK-21P61565 698 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 TFAP4Q01664 338 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 DLX2Q07687 328 aaPredicted RBP13.16□□□□□ -0.3
CCDC47-206ENST00000584112 MKRN4PQ13434 485 aaPredicted RBP13.16□□□□□ -0.3
CCDC47-206ENST00000584112 RSPO4Q2I0M5 234 aaPredicted RBP13.16□□□□□ -0.3
CCDC47-206ENST00000584112 NBPF20Q3BBV1 942 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 REPS2Q8NFH8 660 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 TGS1Q96RS0 853 aaKnown RBP13.16□□□□□ -0.3
CCDC47-206ENST00000584112 TINF2Q9BSI4 451 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 DACH1Q9UI36 760 aa13.16□□□□□ -0.3
CCDC47-206ENST00000584112 TSPY2A6NKD2 308 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 TRIM6-TRIM34B2RNG4 842 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 ATP2A1O14983 1001 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 ADCY6O43306 1168 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 B4GALT4O60513 344 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 PGK2P07205 417 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 FDX1P10109 184 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 ALX1Q15699 326 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 MCMDC2Q4G0Z9 681 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 SNRNP48Q6IEG0 339 aaKnown RBP13.15□□□□□ -0.3
CCDC47-206ENST00000584112 RPAINQ86UA6 219 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 LRRC47Q8N1G4 583 aaKnown RBP13.15□□□□□ -0.3
CCDC47-206ENST00000584112 TMEM105Q8N8V8 129 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 ANAPC4Q9UJX5 808 aa13.15□□□□□ -0.3
CCDC47-206ENST00000584112 DIS3Q9Y2L1 958 aaKnown RBP13.15□□□□□ -0.3
CCDC47-206ENST00000584112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC47-206ENST00000584112 ZMYM6O95789 1325 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 LINC01553A4QN01 128 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 FOXP2O15409 715 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 BMP3P12645 472 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 CST5P28325 142 aaPredicted RBP13.14□□□□□ -0.31
CCDC47-206ENST00000584112 NUBP1P53384 320 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 OAZ1P54368 228 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 MFAP1P55081 439 aaKnown RBP13.14□□□□□ -0.31
CCDC47-206ENST00000584112 CTDSPL2Q05D32 466 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 COL19A1Q14993 1142 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 SLFN13Q68D06 897 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 B4GALNT3Q6L9W6 998 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 CHD1LQ86WJ1 897 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 SLC43A3Q8NBI5 491 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 KCNG4Q8TDN1 519 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 KIFC2Q96AC6 838 aa13.14□□□□□ -0.31
CCDC47-206ENST00000584112 MRPL38Q96DV4 380 aaKnown RBP13.14□□□□□ -0.31
CCDC47-206ENST00000584112 GRIN2DO15399 1336 aa13.13□□□□□ -0.31
CCDC47-206ENST00000584112 ATG2AQ2TAZ0 1938 aa13.13□□□□□ -0.31
CCDC47-206ENST00000584112 A0A0D9SFI3 127 aa13.13□□□□□ -0.31
CCDC47-206ENST00000584112 ORC4O43929 436 aa13.13□□□□□ -0.31
CCDC47-206ENST00000584112 RANBP6O60518 1105 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms