RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 ZSCAN16Q9H4T2 348 aaPredicted RBP11.55□□□□□ -0.56
CRLF3-202ENST00000577725 GINM1Q9NU53 330 aa11.55□□□□□ -0.56
CRLF3-202ENST00000577725 FBXO28Q9NVF7 368 aa11.55□□□□□ -0.56
CRLF3-202ENST00000577725 SEC63Q9UGP8 760 aaKnown RBP11.55□□□□□ -0.56
CRLF3-202ENST00000577725 GJD2Q9UKL4 321 aa11.55□□□□□ -0.56
CRLF3-202ENST00000577725 SMCHD1A6NHR9 2005 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 PRPF40AO75400 957 aaKnown RBP11.54□□□□□ -0.56
CRLF3-202ENST00000577725 PDIA4P13667 645 aaKnown RBP11.54□□□□□ -0.56
CRLF3-202ENST00000577725 XBP1P17861 261 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 SMARCA1P28370 1054 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 KRT2P35908 639 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 HMGCS2P54868 508 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 NAPAP54920 295 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 RTP1P59025 263 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 SAFBQ15424 915 aaKnown RBP eCLIP11.54□□□□□ -0.56
CRLF3-202ENST00000577725 CDC37Q16543 378 aaPredicted RBP11.54□□□□□ -0.56
CRLF3-202ENST00000577725 FAM110CQ1W6H9 321 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 QRICH1Q2TAL8 776 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 ZNF280CQ8ND82 737 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 RASGRP4Q8TDF6 673 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 KIFC2Q96AC6 838 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 WDR18Q9BV38 432 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 KIAA1683Q9H0B3 1180 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 AS3MTQ9HBK9 375 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 PRDM5Q9NQX1 630 aaPredicted RBP11.54□□□□□ -0.56
CRLF3-202ENST00000577725 EMILIN3Q9NT22 766 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 PRR12Q9ULL5 1215 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 SYNPO2Q9UMS6 1093 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 ATP6V1DQ9Y5K8 247 aa11.54□□□□□ -0.56
CRLF3-202ENST00000577725 LTBP2Q14767 1821 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 A0A0G2JLL6 359 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 PNMA6FA0A0J9YX94 578 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 GADD45BO75293 160 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 EARS2Q5JPH6 523 aaKnown RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 MYSM1Q5VVJ2 828 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 CCDC174Q6PII3 467 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 BTNL9Q6UXG8 535 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 PRRT2Q7Z6L0 340 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 MTMR8Q96EF0 704 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 USP28Q96RU2 1077 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 TANGO6Q9C0B7 1094 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 PRDM12Q9H4Q4 367 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 RPAP3Q9H6T3 665 aaPredicted RBP11.53□□□□□ -0.56
CRLF3-202ENST00000577725 LMBRD1Q9NUN5 540 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 BARHL2Q9NY43 387 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 ATP11BQ9Y2G3 1177 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 DNAH12Q6ZR08 3092 aa11.53□□□□□ -0.56
CRLF3-202ENST00000577725 NCOR1O75376 2440 aa11.52□□□□□ -0.56
CRLF3-202ENST00000577725 PTPRFP10586 1907 aa11.52□□□□□ -0.56
CRLF3-202ENST00000577725 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 PRR33A8MZF0 331 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 GOLGA6L22H0YM25 854 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 ZBTB5O15062 677 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 WDR46O15213 610 aaKnown RBP11.52□□□□□ -0.57
CRLF3-202ENST00000577725 VCAM1P19320 739 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 ATP2B1P20020 1258 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 U2AF2P26368 475 aaKnown RBP eCLIP11.52□□□□□ -0.57
CRLF3-202ENST00000577725 STAT2P52630 851 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 BACE1P56817 501 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 KRT85P78386 507 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 USH1GQ495M9 461 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 GADL1Q6ZQY3 521 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 BRAPQ7Z569 592 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 NOSTRINQ8IVI9 506 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 BLIDQ8IZY5 108 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 SH3GLB2Q9NR46 395 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 AFG3L2Q9Y4W6 797 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 CLIC4Q9Y696 253 aa11.52□□□□□ -0.57
CRLF3-202ENST00000577725 SMCO2A6NFE2 343 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 XRCC5P13010 732 aaKnown RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 IGFBP4P22692 258 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 KCNQ1P51787 676 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 USP14P54578 494 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 TFF2Q03403 129 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 CACNB2Q08289 660 aaPredicted RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 ADGRE1Q14246 886 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 UBE2SQ16763 222 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 FAM160B2Q86V87 743 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 TRMT44Q8IYL2 757 aaKnown RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 RGS22Q8NE09 1264 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 CCDC148Q8NFR7 591 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 LEO1Q8WVC0 666 aaPredicted RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 TNFRSF25Q93038 417 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 ZNF396Q96N95 335 aaPredicted RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 FOXP1Q9H334 677 aaPredicted RBP11.51□□□□□ -0.57
CRLF3-202ENST00000577725 BRMS1Q9HCU9 246 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 TMEM260Q9NX78 707 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 FEM1BQ9UK73 627 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 PCDHA4Q9UN74 947 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 PARP14Q460N5 1801 aa11.51□□□□□ -0.57
CRLF3-202ENST00000577725 WNT7AO00755 349 aa11.5□□□□□ -0.57
CRLF3-202ENST00000577725 FLOT1O75955 427 aa11.5□□□□□ -0.57
CRLF3-202ENST00000577725 CYP2B6P20813 491 aa11.5□□□□□ -0.57
CRLF3-202ENST00000577725 CALML3P27482 149 aa11.5□□□□□ -0.57
CRLF3-202ENST00000577725 CCND3P30281 292 aaPredicted RBP11.5□□□□□ -0.57
CRLF3-202ENST00000577725 TOB1P50616 345 aaPredicted RBP11.5□□□□□ -0.57
CRLF3-202ENST00000577725 ADCY7P51828 1080 aa11.5□□□□□ -0.57
CRLF3-202ENST00000577725 JAKMIP3Q5VZ66 844 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms