RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 LARP4BQ92615 738 aaKnown RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 CUL5Q93034 780 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 AKT1S1Q96B36 256 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 CDK5RAP3Q96JB5 506 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 CNOT6LQ96LI5 555 aaKnown RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 ZDHHC15Q96MV8 337 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 TMX4Q9H1E5 349 aaPredicted RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 ARGLU1Q9NWB6 273 aaPredicted RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 EPN1Q9Y6I3 576 aaPredicted RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 BRWD3Q6RI45 1802 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 MYH8P13535 1937 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 GREB1LQ9C091 1923 aaPredicted RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 NDUFA10O95299 355 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 SLC16A2P36021 539 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 MCM6Q14566 821 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 UBE2SQ16763 222 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 CCDC96Q2M329 555 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 CENPPQ6IPU0 288 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 KCTD1Q719H9 257 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 KRT222Q8N1A0 295 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 GPR161Q8N6U8 529 aaKnown RBP11.26□□□□□ -0.61
VPS53-220ENST00000576149 BBXQ8WY36 941 aaPredicted RBP11.26□□□□□ -0.61
VPS53-220ENST00000576149 HPS3Q969F9 1004 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 SLF1Q9BQI6 1058 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 NUP58Q9BVL2 599 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 MRIQ9BWK5 157 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 TTYH3Q9C0H2 523 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 SEMA6BQ9H3T3 888 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 DNAJC18Q9H819 358 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 MYO1AQ9UBC5 1043 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 ADAMTSL1Q8N6G6 1762 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 POTEMA6NI47 508 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 USP17L10C9JJH3 530 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 ABL1P00519 1130 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 ATP2B2Q01814 1243 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 TUBB2AQ13885 445 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 BMS1Q14692 1282 aaKnown RBP11.26□□□□□ -0.61
VPS53-220ENST00000576149 KRT79Q5XKE5 535 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 WDR59Q6PJI9 974 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 ZSCAN29Q8IWY8 852 aaPredicted RBP11.26□□□□□ -0.61
VPS53-220ENST00000576149 RETREG2Q8NC44 543 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 SNX29Q8TEQ0 813 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 RABGGTAQ92696 567 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 RAD54LQ92698 747 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 EEF2KMTQ96G04 330 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 NUDT12Q9BQG2 462 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 TUBB2BQ9BVA1 445 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 SLC39A2Q9NP94 309 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 DDX25Q9UHL0 483 aaKnown RBP11.26□□□□□ -0.61
VPS53-220ENST00000576149 CDC23Q9UJX2 597 aa11.26□□□□□ -0.61
VPS53-220ENST00000576149 CTAGE9A4FU28 777 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 RASSF10A6NK89 507 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 ZRANB2O95218 330 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS53-220ENST00000576149 MMP10P09238 476 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 SLURP2P0DP57 97 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 TBC1D8BQ0IIM8 1120 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 TSR1Q2NL82 804 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 TMEM119Q4V9L6 283 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 MIIPQ5JXC2 388 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 SLC35F6Q8N357 371 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 GOLGA1Q92805 767 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 HAS1Q92839 578 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 MKL1Q969V6 931 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 DHX36Q9H2U1 1008 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 PSTPIP2Q9H939 334 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 DBNDD1Q9H9R9 158 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 KCNQ5Q9NR82 932 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 REXO2Q9Y3B8 237 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 FHOD1Q9Y613 1164 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 GCFC2P16383 781 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 HOXA7P31268 230 aaPredicted RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 MTIF2P46199 727 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 MEA1Q16626 185 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 KIF4BQ2VIQ3 1234 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 TMCO3Q6UWJ1 677 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 SRGAP1Q7Z6B7 1085 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 NOC4LQ9BVI4 516 aaKnown RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 LRRC27Q9C0I9 530 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 EPC1Q9H2F5 836 aa11.25□□□□□ -0.61
VPS53-220ENST00000576149 ATF5Q9Y2D1 282 aaPredicted RBP11.25□□□□□ -0.61
VPS53-220ENST00000576149 COL11A2P13942 1736 aaPredicted RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 PLSCR1O15162 318 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 FKBP1AP62942 108 aaKnown RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 EHHADHQ08426 723 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 DMTNQ08495 405 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 TEX35Q5T0J7 233 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 STRIP1Q5VSL9 837 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 DYMQ7RTS9 669 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 KCNK18Q7Z418 384 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 GUF1Q8N442 669 aaKnown RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 CEP112Q8N8E3 955 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 ERGIC2Q96RQ1 377 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 IDI2Q9BXS1 227 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 AGPAT5Q9NUQ2 364 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 NYAP2Q9P242 653 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 DDTLA6NHG4 134 aaPredicted RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 EEF2P13639 858 aaKnown RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 TRIM21P19474 475 aaKnown RBP11.24□□□□□ -0.61
VPS53-220ENST00000576149 ZBED6P86452 979 aa11.24□□□□□ -0.61
VPS53-220ENST00000576149 HDLBPQ00341 1268 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms