RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NFRKBQ6P4R8 1299 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 ANKS1AQ92625 1134 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 COPS5Q92905 334 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 YTHDC1Q96MU7 727 aaKnown RBP24.69■■□□□ 1.54
VPS53-216ENST00000574029 UBA5Q9GZZ9 404 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 RWDD1Q9H446 243 aaPredicted RBP24.69■■□□□ 1.54
VPS53-216ENST00000574029 SCN5AQ14524 2016 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 SPTBN5Q9NRC6 3674 aaKnown RBP24.68■■□□□ 1.54
VPS53-216ENST00000574029 TXNP10599 105 aaKnown RBP24.68■■□□□ 1.54
VPS53-216ENST00000574029 RABGGTBP53611 331 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 PTPN11Q06124 597 aaPredicted RBP24.68■■□□□ 1.54
VPS53-216ENST00000574029 CHD1LQ86WJ1 897 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 IQCA1Q86XH1 822 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 PNMA1Q8ND90 353 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 PPM1EQ8WY54 764 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 PCDHA11Q9Y5I1 949 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 TANC1Q9C0D5 1861 aa24.68■■□□□ 1.54
VPS53-216ENST00000574029 KDM4AO75164 1064 aa24.67■■□□□ 1.54
VPS53-216ENST00000574029 ARIH2O95376 493 aa24.67■■□□□ 1.54
VPS53-216ENST00000574029 TTLL4Q14679 1199 aa24.67■■□□□ 1.54
VPS53-216ENST00000574029 CDC37Q16543 378 aaPredicted RBP24.67■■□□□ 1.54
VPS53-216ENST00000574029 FAM47CQ5HY64 1035 aa24.67■■□□□ 1.54
VPS53-216ENST00000574029 CWC27Q6UX04 472 aaKnown RBP24.67■■□□□ 1.54
VPS53-216ENST00000574029 ABCB11O95342 1321 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 CHD9Q3L8U1 2897 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 ZBBXA8MT70 800 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 RFC2P35250 354 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 NUCB1Q02818 461 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 CCDC62Q6P9F0 684 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 ATXN2LQ8WWM7 1075 aaKnown RBP24.66■■□□□ 1.54
VPS53-216ENST00000574029 TBC1D5Q92609 795 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 ZSCAN10Q96SZ4 725 aaPredicted RBP24.66■■□□□ 1.54
VPS53-216ENST00000574029 KAT14Q9H8E8 782 aa24.66■■□□□ 1.54
VPS53-216ENST00000574029 KIAA1217Q5T5P2 1943 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 PITPNM1O00562 1244 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 IGHDP01880 384 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 MYOGP15173 224 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 ATP2A2P16615 1042 aaKnown RBP24.65■■□□□ 1.54
VPS53-216ENST00000574029 DEFB128Q7Z7B8 93 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 ADGRF4Q8IZF3 695 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 SYTL5Q8TDW5 730 aaPredicted RBP24.65■■□□□ 1.54
VPS53-216ENST00000574029 PPP1R13LQ8WUF5 828 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 DIAPH3Q9NSV4 1193 aa24.65■■□□□ 1.54
VPS53-216ENST00000574029 B4E1Z4 1266 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 IGFBP4P22692 258 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 ASPRV1Q53RT3 343 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 PPP2R2DQ66LE6 453 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 TAAR1Q96RJ0 339 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 DSCC1Q9BVC3 393 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 COL20A1Q9P218 1284 aa24.64■■□□□ 1.54
VPS53-216ENST00000574029 MYH6P13533 1939 aa24.64■■□□□ 1.53
VPS53-216ENST00000574029 HIP1O00291 1037 aa24.63■■□□□ 1.53
VPS53-216ENST00000574029 IQCF3P0C7M6 154 aa24.63■■□□□ 1.53
VPS53-216ENST00000574029 ACTN1P12814 892 aa24.63■■□□□ 1.53
VPS53-216ENST00000574029 ENAHQ8N8S7 591 aaPredicted RBP24.63■■□□□ 1.53
VPS53-216ENST00000574029 NSUN6Q8TEA1 469 aaKnown RBP24.63■■□□□ 1.53
VPS53-216ENST00000574029 ZSWIM5Q9P217 1185 aa24.63■■□□□ 1.53
VPS53-216ENST00000574029 THEGQ9P2T0 379 aa24.63■■□□□ 1.53
VPS53-216ENST00000574029 MYO9BQ13459 2157 aa24.62■■□□□ 1.53
VPS53-216ENST00000574029 CCDC85BQ15834 202 aaPredicted RBP24.62■■□□□ 1.53
VPS53-216ENST00000574029 QRICH1Q2TAL8 776 aa24.62■■□□□ 1.53
VPS53-216ENST00000574029 MCF2L2Q86YR7 1114 aa24.62■■□□□ 1.53
VPS53-216ENST00000574029 RETREG2Q8NC44 543 aa24.62■■□□□ 1.53
VPS53-216ENST00000574029 IWS1Q96ST2 819 aa24.62■■□□□ 1.53
VPS53-216ENST00000574029 GH1P01241 217 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 MMP3P08254 477 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 ARHGAP1Q07960 439 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 BFSP2Q13515 415 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 IMMTQ16891 758 aaKnown RBP24.61■■□□□ 1.53
VPS53-216ENST00000574029 SEPT14Q6ZU15 432 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 AFG1LQ8WV93 481 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 ASB2Q96Q27 587 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 SLC9A7Q96T83 725 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 JMJD4Q9H9V9 463 aa24.61■■□□□ 1.53
VPS53-216ENST00000574029 MRPL11Q9Y3B7 192 aaKnown RBP24.61■■□□□ 1.53
VPS53-216ENST00000574029 PARP1P09874 1014 aaKnown RBP24.6■■□□□ 1.53
VPS53-216ENST00000574029 STXBP2Q15833 593 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 LY6KQ17RY6 165 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 TMEM67Q5HYA8 995 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 SESTD1Q86VW0 696 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 FBXO11Q86XK2 927 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 PHOSPHO2Q8TCD6 241 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 RMDN3Q96TC7 470 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 KRT23Q9C075 422 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 CTNNA3Q9UI47 895 aa24.6■■□□□ 1.53
VPS53-216ENST00000574029 TNFRSF10AO00220 468 aa24.59■■□□□ 1.53
VPS53-216ENST00000574029 PTGISQ16647 500 aa24.59■■□□□ 1.53
VPS53-216ENST00000574029 NOD1Q9Y239 953 aa24.59■■□□□ 1.53
VPS53-216ENST00000574029 CA3P07451 260 aa24.58■■□□□ 1.53
VPS53-216ENST00000574029 MRPS5P82675 430 aaKnown RBP24.58■■□□□ 1.53
VPS53-216ENST00000574029 KAT2BQ92831 832 aa24.58■■□□□ 1.53
VPS53-216ENST00000574029 CTAGE1Q96RT6 745 aa24.58■■□□□ 1.53
VPS53-216ENST00000574029 CNNM2Q9H8M5 875 aa24.58■■□□□ 1.53
VPS53-216ENST00000574029 VAT1LQ9HCJ6 419 aa24.58■■□□□ 1.53
VPS53-216ENST00000574029 DDX41Q9UJV9 622 aaKnown RBP24.58■■□□□ 1.53
VPS53-216ENST00000574029 TRIP12Q14669 1992 aaPredicted RBP24.58■■□□□ 1.52
VPS53-216ENST00000574029 DHX16O60231 1041 aaKnown RBP24.57■■□□□ 1.52
VPS53-216ENST00000574029 CASTP20810 708 aaKnown RBP24.57■■□□□ 1.52
VPS53-216ENST00000574029 GHRHRQ02643 423 aa24.57■■□□□ 1.52
VPS53-216ENST00000574029 ARHGEF16Q5VV41 709 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms