RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 KLRF2D3W0D1 207 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 MYBL2P10244 700 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 TECP42680 631 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 TDRD12Q587J7 1177 aaKnown RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 BICDL1Q6ZP65 573 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 CELF1Q92879 486 aaKnown RBP11.94□□□□□ -0.5
CCDC40-207ENST00000572253 LRRC1Q9BTT6 524 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 PLEKHA4Q9H4M7 779 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 STIM2Q9P246 746 aa11.94□□□□□ -0.5
CCDC40-207ENST00000572253 ABCB11O95342 1321 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 A0A087WUV0 522 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 RASSF10A6NK89 507 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 SMCR8Q8TEV9 937 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 RNF14Q9UBS8 474 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 ABCA3Q99758 1704 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 FLT1P17948 1338 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 COL22A1Q8NFW1 1626 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 PVALEFA0A1B0GWK0 134 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 DDB1Q16531 1140 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 GLE1Q53GS7 698 aaKnown RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 DYNLL2Q96FJ2 89 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 NLRP3Q96P20 1036 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 EDEM3Q9BZQ6 932 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 ZMYND12Q9H0C1 365 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 IL17RBQ9NRM6 502 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 CAPN6Q9Y6Q1 641 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 ZC3H4Q9UPT8 1303 aaKnown RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 USP17L3A6NCW0 530 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 USP17L4A6NCW7 530 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 SHOX2O60902 331 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 LDHBP07195 334 aaKnown RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 LRRC63Q05C16 580 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 CFAP221Q4G0U5 840 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 CENPPQ6IPU0 288 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 UNC13DQ70J99 1090 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 USP17L1Q7RTZ2 530 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 ZNF572Q7Z3I7 529 aaPredicted RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 IFT20Q8IY31 132 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 SPZ1Q9BXG8 430 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 NUCKS1Q9H1E3 243 aaKnown RBP11.93□□□□□ -0.5
CCDC40-207ENST00000572253 ARHGAP20Q9P2F6 1191 aa11.93□□□□□ -0.5
CCDC40-207ENST00000572253 LDHCP07864 332 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 ITPK1Q13572 414 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 NYXQ9GZU5 481 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 AGPSO00116 658 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 PLEKP08567 350 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-207ENST00000572253 TXKP42681 527 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 IRAK1P51617 712 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 GNGT1P63211 74 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 NFRKBQ6P4R8 1299 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 GUF1Q8N442 669 aaKnown RBP11.92□□□□□ -0.5
CCDC40-207ENST00000572253 TMEM47Q9BQJ4 181 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 SEMA6BQ9H3T3 888 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 NHSL1Q5SYE7 1610 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 PALM3A6NDB9 673 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-207ENST00000572253 ZNF263O14978 683 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 CCT5P48643 541 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 APBA1Q02410 837 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 C3orf67Q6ZVT6 689 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 REXO1Q8N1G1 1221 aaKnown RBP11.92□□□□□ -0.5
CCDC40-207ENST00000572253 RNF10Q8N5U6 811 aaKnown RBP11.92□□□□□ -0.5
CCDC40-207ENST00000572253 WDR66Q8TBY9 1149 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 PSMB7Q99436 277 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 JAG2Q9Y219 1238 aa11.92□□□□□ -0.5
CCDC40-207ENST00000572253 RREB1Q92766 1687 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 CASZ1Q86V15 1759 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 LRRC53A6NM62 1247 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 GOLGA8HP0CJ92 632 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 KLRK1P26718 216 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 NNTQ13423 1086 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 SLC9C1Q4G0N8 1177 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 TADA2BQ86TJ2 420 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 BCAS4Q8TDM0 211 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 DMGDHQ9UI17 866 aaKnown RBP11.91□□□□□ -0.5
CCDC40-207ENST00000572253 SIK3Q9Y2K2 1263 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 CYTH3O43739 400 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 LCA5LO95447 670 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 SLC7A5Q01650 507 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 PAK2Q13177 524 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 CALCRLQ16602 461 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 CCDC40Q4G0X9 1142 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 MICALL1Q8N3F8 863 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 KIAA0895Q8NCT3 520 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 LARP4BQ92615 738 aaKnown RBP11.91□□□□□ -0.5
CCDC40-207ENST00000572253 HINFPQ9BQA5 517 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 RIC8AQ9NPQ8 531 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 A0A1B0GUL6 1792 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 SSU72P8A0A1W2PR75 194 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 CFAP58Q5T655 872 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 KRT79Q5XKE5 535 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 PDXDC1Q6P996 788 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 DYMQ7RTS9 669 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 TBCKQ8TEA7 893 aa11.91□□□□□ -0.5
CCDC40-207ENST00000572253 PJA2O43164 708 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 MARCH6O60337 910 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 CXCR5P32302 372 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 PSMD2Q13200 908 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 EZH2Q15910 746 aaKnown RBP11.9□□□□□ -0.5
CCDC40-207ENST00000572253 ARHGAP27Q6ZUM4 889 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 CAVIN3Q969G5 261 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms