RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PAPD7Q5XG87 772 aaKnown RBP25.41■■□□□ 1.66
VPS53-211ENST00000571805 LRRC47Q8N1G4 583 aaKnown RBP25.41■■□□□ 1.66
VPS53-211ENST00000571805 HDAC6Q9UBN7 1215 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 ATP1A1P05023 1023 aaKnown RBP25.41■■□□□ 1.66
VPS53-211ENST00000571805 CDK17Q00537 523 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 PDIA5Q14554 519 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 LACRTQ9GZZ8 138 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 LTBP1Q14766 1721 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 ERLIN1O75477 346 aa25.4■■□□□ 1.66
VPS53-211ENST00000571805 LARP4BQ92615 738 aaKnown RBP25.4■■□□□ 1.66
VPS53-211ENST00000571805 JAKMIP2Q96AA8 810 aa25.4■■□□□ 1.66
VPS53-211ENST00000571805 KIAA1328Q86T90 577 aa25.4■■□□□ 1.66
VPS53-211ENST00000571805 C6orf229H3BNL8 230 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 H3BQF6 201 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 GTF2IP78347 998 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 PICALMQ13492 652 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 TMEM266Q2M3C6 531 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 HDXQ7Z353 690 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 PCMTD1Q96MG8 357 aaPredicted RBP25.39■■□□□ 1.66
VPS53-211ENST00000571805 NUDT12Q9BQG2 462 aa25.39■■□□□ 1.66
VPS53-211ENST00000571805 KRT86O43790 486 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 FKBP15Q5T1M5 1219 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 CLEC10AQ8IUN9 316 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 MSL3Q8N5Y2 521 aaKnown RBP25.39■■□□□ 1.65
VPS53-211ENST00000571805 RAD54LQ92698 747 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 JMJD4Q9H9V9 463 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 SAR1BQ9Y6B6 198 aa25.39■■□□□ 1.65
VPS53-211ENST00000571805 POTEMA6NI47 508 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 TUBBP07437 444 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 EIF6P56537 245 aaKnown RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 DPP8Q6V1X1 898 aaPredicted RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 DYMQ7RTS9 669 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 GUF1Q8N442 669 aaKnown RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 EHBP1Q8NDI1 1231 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 PURBQ96QR8 312 aaKnown RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 CRAMP1Q96RY5 1269 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 GPCPD1Q9NPB8 672 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 DDX4Q9NQI0 724 aaKnown RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 SIK3Q9Y2K2 1263 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 HNRNPH3P31942 346 aaKnown RBP25.38■■□□□ 1.65
VPS53-211ENST00000571805 VWA3BQ502W6 1294 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 SUGCTQ9HAC7 445 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 RIC8AQ9NPQ8 531 aa25.38■■□□□ 1.65
VPS53-211ENST00000571805 ERICH4A6NGS2 130 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 PPP1R11O60927 126 aaPredicted RBP25.37■■□□□ 1.65
VPS53-211ENST00000571805 ZNF543Q08ER8 600 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 WDR93Q6P2C0 686 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 KCNK18Q7Z418 384 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 IQCDQ96DY2 449 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 CDK5RAP3Q96JB5 506 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 PNMA6FA0A0J9YX94 578 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 CLK2P49760 499 aaKnown RBP25.37■■□□□ 1.65
VPS53-211ENST00000571805 EHHADHQ08426 723 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 TMEM119Q4V9L6 283 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 PPP4R3AQ6IN85 833 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 ADGRF4Q8IZF3 695 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 MMS19Q96T76 1030 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 RAB34Q9BZG1 259 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 NDST4Q9H3R1 872 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 DUSP10Q9Y6W6 482 aa25.37■■□□□ 1.65
VPS53-211ENST00000571805 LRRC37AA6NMS7 1700 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 ZNF263O14978 683 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 CYP27A1Q02318 531 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 PPP1R18Q6NYC8 613 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 PLAGL2Q9UPG8 496 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 SRGAP2O75044 1071 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 TTLL1O95922 423 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 SNX29Q8TEQ0 813 aa25.36■■□□□ 1.65
VPS53-211ENST00000571805 ABCB11O95342 1321 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 KLRG2A4D1S0 409 aaPredicted RBP25.35■■□□□ 1.65
VPS53-211ENST00000571805 EPHB6O15197 1021 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 DDR1Q08345 913 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 KRT79Q5XKE5 535 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 GBP3Q9H0R5 595 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 PDE11AQ9HCR9 933 aa25.35■■□□□ 1.65
VPS53-211ENST00000571805 CCDC66A2RUB6 948 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 IPO7O95373 1038 aaKnown RBP25.34■■□□□ 1.65
VPS53-211ENST00000571805 TNNI2P48788 182 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 ECM1Q16610 540 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 UBE2SQ16763 222 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 CERS5Q8N5B7 392 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 DDX12PQ92771 950 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 PLEKP08567 350 aaPredicted RBP25.34■■□□□ 1.65
VPS53-211ENST00000571805 VAV2P52735 878 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 USP14P54578 494 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 LRRC63Q05C16 580 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 MAN2A1Q16706 1144 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 TAF3Q5VWG9 929 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 TTBK2Q6IQ55 1244 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 HAS1Q92839 578 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 SERPINB13Q9UIV8 391 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 SUGT1Q9Y2Z0 365 aa25.34■■□□□ 1.65
VPS53-211ENST00000571805 RIMBP2O15034 1052 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 LRRC55Q6ZSA7 311 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 CCDC42Q96M95 316 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 ARHGAP20Q9P2F6 1191 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 C10orf71Q711Q0 1435 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 ANO9A1A5B4 782 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 SHMT1P34896 483 aa25.33■■□□□ 1.65
VPS53-211ENST00000571805 PSMD2Q13200 908 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms