RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 CCDC47Q96A33 483 aaKnown RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 PNMA5Q96PV4 448 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 WDR24Q96S15 920 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 DHX36Q9H2U1 1008 aaKnown RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 PLIN4Q96Q06 1357 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 MYH7BA7E2Y1 1941 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 POTEB3A0JP26 581 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 POTECB2RU33 542 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 LAD1O00515 517 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 FANCGO15287 622 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CHMP2AO43633 222 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CFBP00751 764 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 TPM1P09493 284 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 SF3B2Q13435 895 aaKnown RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 FAM83BQ5T0W9 1011 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CC2D2BQ6DHV5 1058 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 NCAPH2Q6IBW4 605 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 POTEBQ6S5H4 581 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 OGFOD1Q8N543 542 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 TTLL6Q8N841 843 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 LARP4BQ92615 738 aaKnown RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 CCDC17Q96LX7 622 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 P2RX7Q99572 595 aaKnown RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 PKD2L1Q9P0L9 805 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 RGS17Q9UGC6 210 aaPredicted RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 PCDHA12Q9UN75 941 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 KIAA1024Q9UPX6 916 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 PSDA5PKW4 1024 aaPredicted RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 ABL1P00519 1130 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 KRT9P35527 623 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 PRPHP41219 470 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 KIAA1755Q5JYT7 1200 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 REXO1L1PQ8IX06 675 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CYP2W1Q8TAV3 490 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 TBC1D5Q92609 795 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CTAGE1Q96RT6 745 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 ANO3Q9BYT9 981 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 GLIS2Q9BZE0 524 aaPredicted RBP11.11□□□□□ -0.63
VPS53-206ENST00000570359 EPC1Q9H2F5 836 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 SERPINA10Q9UK55 444 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 POTEFA5A3E0 1075 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 MFAP3LO75121 409 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 KRT18P05783 430 aaKnown RBP11.1□□□□□ -0.63
VPS53-206ENST00000570359 POTEIP0CG38 1075 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 ZNF76P36508 570 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 POTEGQ6S5H5 508 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 POTEEQ6S8J3 1075 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 TMEM179Q6ZVK1 233 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 FBXO11Q86XK2 927 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 IRF2BP1Q8IU81 584 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 DDX12PQ92771 950 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 HAS1Q92839 578 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 MTMR9Q96QG7 549 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 CAMKK2Q96RR4 588 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 SLF1Q9BQI6 1058 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 BLOC1S4Q9NUP1 217 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 FAM170AA1A519 330 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 ZSCAN12O43309 604 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 BMP3P12645 472 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 GTF2F1P35269 517 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS53-206ENST00000570359 CBX1P83916 185 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 ERCC6LQ2NKX8 1250 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 C7orf43Q8WVR3 580 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 CNOT6LQ96LI5 555 aaKnown RBP11.1□□□□□ -0.63
VPS53-206ENST00000570359 AK8Q96MA6 479 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 TANGO6Q9C0B7 1094 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 PRDM10Q9NQV6 1147 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 FBXO28Q9NVF7 368 aa11.1□□□□□ -0.63
VPS53-206ENST00000570359 ESYT2A0FGR8 921 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 SPDYE3A6NKU9 549 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 MYO1BO43795 1136 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 RHOBTB3O94955 611 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 TFRCP02786 760 aaKnown RBP11.09□□□□□ -0.63
VPS53-206ENST00000570359 NOVP48745 357 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 ETF1P62495 437 aaKnown RBP11.09□□□□□ -0.63
VPS53-206ENST00000570359 NBPF9Q3BBW0 867 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 CCDC93Q567U6 631 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 SYDE2Q5VT97 1194 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 GIMAP8Q8ND71 665 aaPredicted RBP11.09□□□□□ -0.63
VPS53-206ENST00000570359 P2RX5Q93086 422 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 CHP1Q99653 195 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 IDI2Q9BXS1 227 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 FGFBP2Q9BYJ0 223 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 RAB34Q9BZG1 259 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 EHD4Q9H223 541 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 FZD1Q9UP38 647 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 STX10O60499 249 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 IGSF3O75054 1194 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 DUSP9Q99956 384 aaKnown RBP11.09□□□□□ -0.63
VPS53-206ENST00000570359 TUBGCP2Q9BSJ2 902 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 CARD6Q9BX69 1037 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 HOMER2Q9NSB8 354 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 ZNF70Q9UC06 446 aaPredicted RBP11.09□□□□□ -0.63
VPS53-206ENST00000570359 TRIM10Q9UDY6 481 aa11.09□□□□□ -0.63
VPS53-206ENST00000570359 SPDYE2BA6NHP3 402 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 SLU7O95391 586 aaKnown RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 SPDYE6P0CI01 402 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 TRIM21P19474 475 aaKnown RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 CASQ1P31415 396 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms