RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PADI6Q6TGC4 694 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 MCF2L2Q86YR7 1114 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 CEP57L1Q8IYX8 460 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 DNAJC5GQ8N7S2 189 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 CNNM3Q8NE01 707 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 LRRC27Q9C0I9 530 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 MAGEF1Q9HAY2 307 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 NPDC1Q9NQX5 325 aaPredicted RBP9.04□□□□□ -0.96
VPS39-213ENST00000570062 CCDC39Q9UFE4 941 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 DACH1Q9UI36 760 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 CTDP1Q9Y5B0 961 aaPredicted RBP9.04□□□□□ -0.96
VPS39-213ENST00000570062 WDR90Q96KV7 1748 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 A0A1B0GVL5 298 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 A0A1W2PRG0 241 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 SPDYE3A6NKU9 549 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 TBX3O15119 743 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 NEMFO60524 1076 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 ZBED4O75132 1171 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 SMC2O95347 1197 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 ATP2B1P20020 1258 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 CLK2P49760 499 aaKnown RBP9.03□□□□□ -0.96
VPS39-213ENST00000570062 OAZ1P54368 228 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 TPM4P67936 248 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 ZNF174Q15697 407 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 STX1AQ16623 288 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 SWT1Q5T5J6 900 aaKnown RBP9.03□□□□□ -0.96
VPS39-213ENST00000570062 TTBK2Q6IQ55 1244 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 SHC4Q6S5L8 630 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 TRIML1Q8N9V2 468 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 TTC13Q8NBP0 860 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 ZNF280CQ8ND82 737 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 C12orf42Q96LP6 360 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 FTOQ9C0B1 505 aaKnown RBP eCLIP9.03□□□□□ -0.96
VPS39-213ENST00000570062 RANBP17Q9H2T7 1088 aaKnown RBP9.03□□□□□ -0.96
VPS39-213ENST00000570062 GGA3Q9NZ52 723 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 TMOD4Q9NZQ9 345 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 PRR12Q9ULL5 1215 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 ZNF646O15015 1829 aaPredicted RBP9.03□□□□□ -0.96
VPS39-213ENST00000570062 MYPNQ86TC9 1320 aa9.03□□□□□ -0.96
VPS39-213ENST00000570062 CYP3A7-CYP3A51PA0A087WV96 503 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 GLTPD2A6NH11 291 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 MARCH6O60337 910 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 DDNO94850 711 aaPredicted RBP9.02□□□□□ -0.97
VPS39-213ENST00000570062 OR52Z1P0C646 297 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SLFN14P0C7P3 912 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CYP3A7P24462 503 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 MCM7P33993 719 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SLC16A2P36021 539 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 UBA7P41226 1012 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 EPS15P42566 896 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 IREB2P48200 963 aaKnown RBP9.02□□□□□ -0.97
VPS39-213ENST00000570062 BACE1P56817 501 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 AMPD3Q01432 767 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 TYRO3Q06418 890 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CCDC173Q0VFZ6 552 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SLC35G1Q2M3R5 365 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 NBPF12Q5TAG4 269 aaPredicted RBP9.02□□□□□ -0.97
VPS39-213ENST00000570062 KRBA2Q6ZNG9 492 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SLFN12Q8IYM2 578 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 FAM200AQ8TCP9 573 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 ACER1Q8TDN7 264 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 TBCKQ8TEA7 893 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CCDC47Q96A33 483 aaKnown RBP9.02□□□□□ -0.97
VPS39-213ENST00000570062 COA7Q96BR5 231 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 KLRG1Q96E93 195 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 WRNIP1Q96S55 665 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SLF1Q9BQI6 1058 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 BPIFA3Q9BQP9 254 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 FUCA2Q9BTY2 467 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CCSER1Q9C0I3 900 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 GPBP1L1Q9HC44 474 aaPredicted RBP9.02□□□□□ -0.97
VPS39-213ENST00000570062 HOXC10Q9NYD6 342 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CSADQ9Y600 493 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 ECM29Q5VYK3 1845 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 CDK5RAP2Q96SN8 1893 aa9.02□□□□□ -0.97
VPS39-213ENST00000570062 SMTNL1A8MU46 457 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 GOLGA6L19H0YKK7 550 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 GCOM1H8Y6P7 765 aaPredicted RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 NRG2O14511 850 aaPredicted RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 LCE2BO14633 110 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 CCNT1O60563 726 aaKnown RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 EGFRP00533 1210 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 ICAM1P05362 532 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 POLR2MP0CAP2 368 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 XRCC6P12956 609 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS39-213ENST00000570062 PTPRAP18433 802 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 ECE1P42892 770 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 RRP1BQ14684 758 aaKnown RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 CAMK4Q16566 473 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 INF2Q27J81 1249 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 LETM2Q2VYF4 491 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 TKFCQ3LXA3 575 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 FAM83BQ5T0W9 1011 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 CLEC10AQ8IUN9 316 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 C4orf32Q8N8J7 132 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 TRPM4Q8TD43 1214 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 SHISA4Q96DD7 197 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 FAM20AQ96MK3 541 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 CSRNP2Q9H175 543 aa9.01□□□□□ -0.97
VPS39-213ENST00000570062 RMND1Q9NWS8 449 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms