RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 POLR2MP0CAP2 368 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 ELNP15502 786 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 CYP2B6P20813 491 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 ALDH5A1P51649 535 aaPredicted RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 ADCY7P51828 1080 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 FOSBP53539 338 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 MRPS9P82933 396 aaKnown RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 GUCY1B3Q02153 619 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 TRAF1Q13077 416 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 NR5A1Q13285 461 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 PKP1Q13835 747 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 OLFML2BQ68BL8 750 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 CTU1Q7Z7A3 348 aaKnown RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 ZNF467Q7Z7K2 595 aaPredicted RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 MCF2L2Q86YR7 1114 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 TEX2Q8IWB9 1127 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 CUL5Q93034 780 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 NUDT12Q9BQG2 462 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 PDCD2LQ9BRP1 358 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 PXMP2Q9NR77 195 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 BIN2Q9UBW5 565 aaPredicted RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 TRIM17Q9Y577 477 aa10.67□□□□□ -0.7
VPS35-211ENST00000569950 POTEFA5A3E0 1075 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 BTBD18B2RXH4 712 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 POTEB2H3BUK9 544 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 SYT1P21579 422 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 RGS2P41220 211 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 AKAP17AQ02040 695 aaKnown RBP10.66□□□□□ -0.7
VPS35-211ENST00000569950 KIF22Q14807 665 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 PGM5Q15124 567 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 TMEM63BQ5T3F8 832 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 BLIDQ8IZY5 108 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 CCDC148Q8NFR7 591 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 DNERQ8NFT8 737 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 TINF2Q9BSI4 451 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 ANO3Q9BYT9 981 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 SMC3Q9UQE7 1217 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 ZDHHC9Q9Y397 364 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.66□□□□□ -0.7
VPS35-211ENST00000569950 IVNS1ABPQ9Y6Y0 642 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 TCHHQ07283 1943 aa10.66□□□□□ -0.7
VPS35-211ENST00000569950 MKI67P46013 3256 aaKnown RBP10.66□□□□□ -0.7
VPS35-211ENST00000569950 ZNF865P0CJ78 1059 aaPredicted RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 U2AF2P26368 475 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS35-211ENST00000569950 CYP2C19P33261 490 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 SREBF1P36956 1147 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 MRPL12P52815 198 aaKnown RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 PRMT2P55345 433 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 UBXN2AP68543 259 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 SEMA3FQ13275 785 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 JAKMIP3Q5VZ66 844 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 GALNT17Q6IS24 598 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 TAPT1Q6NXT6 567 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 ARMCX2Q7L311 632 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 VSIG10LQ86VR7 867 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 FCHSD1Q86WN1 690 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 DIS3L2Q8IYB7 885 aaKnown RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 REXO1Q8N1G1 1221 aaKnown RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 SPRYD3Q8NCJ5 442 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 PXYLP1Q8TE99 480 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 CCDC12Q8WUD4 166 aaPredicted RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 WASF1Q92558 559 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 LENG9Q96B70 501 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 ZFP91Q96JP5 570 aaPredicted RBP10.65□□□□□ -0.7
VPS35-211ENST00000569950 C8orf76Q96K31 380 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 RMDN3Q96TC7 470 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 C6orf50Q9HD87 102 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 MTMR6Q9Y217 621 aa10.65□□□□□ -0.7
VPS35-211ENST00000569950 SYNGAP1Q96PV0 1343 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 IGLV3-22A0A075B6J6 115 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 LOC102724159A0A0B4J2E5 919 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 ADCY3O60266 1144 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 NR3C2P08235 984 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 CYBAP13498 195 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 EIF2AK2P19525 551 aaKnown RBP10.64□□□□□ -0.71
VPS35-211ENST00000569950 PTGS1P23219 599 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 GNA11P29992 359 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 TOB1P50616 345 aaPredicted RBP10.64□□□□□ -0.71
VPS35-211ENST00000569950 NLRP5P59047 1200 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 CACNB2Q08289 660 aaPredicted RBP10.64□□□□□ -0.71
VPS35-211ENST00000569950 AP3B2Q13367 1082 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 PWP2Q15269 919 aaKnown RBP10.64□□□□□ -0.71
VPS35-211ENST00000569950 PRAMEF19Q5SWL8 479 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 DPP9Q86TI2 863 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 CYP2W1Q8TAV3 490 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 NSUN6Q8TEA1 469 aaKnown RBP10.64□□□□□ -0.71
VPS35-211ENST00000569950 MBOAT7Q96N66 472 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 PDGFCQ9NRA1 345 aa10.64□□□□□ -0.71
VPS35-211ENST00000569950 RBM47A0AV96 593 aaKnown RBP10.63□□□□□ -0.71
VPS35-211ENST00000569950 FAM86B1E9PN63 330 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 ARIH2O95376 493 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 CYP3A4P08684 503 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 FAM86B2P0C5J1 330 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 ITGB5P18084 799 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 HOXD10P28358 340 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 CIITAP33076 1130 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 ARHGAP4P98171 946 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 RESTQ13127 1097 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 PCNX4Q63HM2 1172 aa10.63□□□□□ -0.71
VPS35-211ENST00000569950 LARP1BQ659C4 914 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms