RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GJB6O95452 261 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 PAMP19021 973 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 L1CAMP32004 1257 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 ZNF143P52747 638 aaPredicted RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 SCRN1Q12765 414 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 GRB10Q13322 594 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 MTA1Q13330 715 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 PWP2Q15269 919 aaKnown RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 OLFML2BQ68BL8 750 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 RCSD1Q6JBY9 416 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 ANKRD23Q86SG2 305 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 ANKLE2Q86XL3 938 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 MICAL1Q8TDZ2 1067 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 USP33Q8TEY7 942 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 MYCBPQ99417 103 aaPredicted RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 TRIM55Q9BYV6 548 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 ZNF552Q9H707 407 aaPredicted RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 GPRC5CQ9NQ84 441 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 IGSF5Q9NSI5 407 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 CLEC1BQ9P126 229 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 DBR1Q9UK59 544 aaKnown RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 EMC9Q9Y3B6 208 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 RWDD3Q9Y3V2 267 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 CEP83Q9Y592 693 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 VIRMAQ69YN4 1812 aaKnown RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 NPHP3-ACAD11A0A0J9YXS1 232 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 MYOCOSA0A1B0GUC4 107 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 DBX1A6NMT0 343 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 NPIPB6E9PJ23 425 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 AGRPO00253 132 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 STK10O94804 968 aaKnown RBP3.97□□□□□ -1.77
VPS35-208ENST00000568612 TSPAN15O95858 294 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 MSL3P1P0C860 447 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 VIPR1P32241 457 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 KCNJ6P48051 423 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 MVKQ03426 396 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 GTF2IRD2BQ6EKJ0 949 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 EEPD1Q7L9B9 569 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 TMC6Q7Z403 805 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 GTF2IRD2Q86UP8 949 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 TRIM59Q8IWR1 403 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 BTN2A2Q8WVV5 523 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 SGSM3Q96HU1 749 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 TOX2Q96NM4 488 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 KRTAP4-12Q9BQ66 201 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 TANGO6Q9C0B7 1094 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 PDLIM7Q9NR12 457 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 BTG4Q9NY30 223 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 CGNQ9P2M7 1197 aaKnown RBP3.97□□□□□ -1.77
VPS35-208ENST00000568612 GULP1Q9UBP9 304 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 ACSL6Q9UKU0 697 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 PHLDB1Q86UU1 1377 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 CADPSQ9ULU8 1353 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 NINLQ9Y2I6 1382 aa3.97□□□□□ -1.77
VPS35-208ENST00000568612 TRBV23OR9-2A0A075B6M9 112 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 CCDC66A2RUB6 948 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 CCER2I3L3R5 266 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 TULP2O00295 520 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 DYNC1I1O14576 645 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 ABLIM1O14639 778 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 U2SURPO15042 1029 aaKnown RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 TBX1O43435 398 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 PEX10O60683 326 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 ITGAVP06756 1048 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 SNRPB2P08579 225 aaKnown RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 CCDC172P0C7W6 258 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 PLS3P13797 630 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 ATP2B1P20020 1258 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 ECI1P42126 302 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 CEBPAP49715 358 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 ERVFRD-1P60508 538 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 DLG4P78352 724 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 TMEM62Q0P6H9 643 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 HDAC1Q13547 482 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 MYBPC2Q14324 1141 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 RGL3Q3MIN7 710 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 CT47A1Q5JQC4 288 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 LCE3BQ5TA77 95 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 MRM1Q6IN84 353 aaKnown RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 CABP7Q86V35 215 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 KRTAP19-1Q8IUB9 90 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 CELF2-AS1Q8N7Q2 184 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 ZNF513Q8N8E2 541 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 BHLHE22Q8NFJ8 381 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 ITFG2Q969R8 447 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 TSPAN18Q96SJ8 248 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 NCAPGQ9BPX3 1015 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 RXFP1Q9HBX9 757 aa3.96□□□□□ -1.78
VPS35-208ENST00000568612 FEZ2Q9UHY8 353 aaPredicted RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 SMG5Q9UPR3 1016 aaKnown RBP3.96□□□□□ -1.78
VPS35-208ENST00000568612 RAD54L2Q9Y4B4 1467 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 TEX51A0A1B0GUA7 166 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 FSD2A1L4K1 749 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 CCDC85CA6NKD9 419 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 F8W031 263 aaPredicted RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 KIF1CO43896 1103 aaKnown RBP3.95□□□□□ -1.78
VPS35-208ENST00000568612 NUAK1O60285 661 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 NPHS1O60500 1241 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 SEMA7AO75326 666 aa3.95□□□□□ -1.78
VPS35-208ENST00000568612 OFD1O75665 1012 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms